Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g02176 ATGGAAGGAGATAAATGTTGTTCAAGTTTGTTTCAAAGGTGCAAGCCATACATAGCTATGATTTGTCTTCAATTTGGTTTTGCTGCTATTGCTCCATTCGCTATAGTTCTTGAGAGGAAGATAAGGCCGAGGATTACGTTTCTTATGTTCATGCAAATGTTTGTATTGGGACTCCTCGGGCCTGTGATTGATCAGAATCTATACTATGCTGGGTTGAAATTCACATCTCCAACATACTCTTGTGCTATTAGCAATATTCTCCCTGCAATGACTTTTGTAATGGCTGTTATTTTCAGGATGGAGAAATTGGACATAAAAAAATTAAGATGCCAAGTAAAAGTGATTGGAACTGTAATCACAGTTGGTGGGGCTATGGTGATGACATTATACAAAGGACAAGTTATGAATATATTGGGTTCTCAATACATGCATCATCCTAGAAACTATGTACCTGAAAACAATAGTGATTCTGGTGAAAAGGATTGGGTTAAAGGTTCAATCCTTCTCATAATTGCTACCTTTGCTTGGTCTTCTTTCTTCATCCTCCAGGCAGTGACATTAAGACAATATTCAGCACAACTTTCACTGACAGCCATAGTATGTTTCTTGGGAACACTTCAATCAATAGCAGTTACATTTGTTATGGAGCACAAACCAAATGTTTGGAACATTGGTTTGGACATGAATTTATTAGCTGCAGCCTATGCTGGTATAATATCATCAGGTCTTACATATTATGTACAAGGAATTGTGATGCAAAAGAAAGGACCAGTTTTTGTGACTGCTTTTAGTCCTCTGATGATGATCATTGTAGCAATCATGGCCACTTTCATCCTTGCTGAAAAATTATATCTTGGAGGTGTTATTGGAGCAATTTTGATCGTAATAGGACTTTACTCCGTTCTATGGGGCAAAAACAAAGAAAACAAAGAGATTGAAGCGGAAACAAAAACAGAAAGAACGGAGTGTTGTGTAAAAAATGGAGTGTTGGAATCAGTAACTGAAGGTGTTGAAATAAATGACATTGAGATGCAAAAGGATGAACCTGCTAAAGTTTTAAGGGTGACAATTATTAGTGCTCCAAAAGTTTAA 1092 0.3681 MEGDKCCSSLFQRCKPYIAMICLQFGFAAIAPFAIVLERKIRPRITFLMFMQMFVLGLLGPVIDQNLYYAGLKFTSPTYSCAISNILPAMTFVMAVIFRMEKLDIKKLRCQVKVIGTVITVGGAMVMTLYKGQVMNILGSQYMHHPRNYVPENNSDSGEKDWVKGSILLIIATFAWSSFFILQAVTLRQYSAQLSLTAIVCFLGTLQSIAVTFVMEHKPNVWNIGLDMNLLAAAYAGIISSGLTYYVQGIVMQKKGPVFVTAFSPLMMIIVAIMATFILAEKLYLGGVIGAILIVIGLYSVLWGKNKENKEIEAETKTERTECCVKNGVLESVTEGVEINDIEMQKDEPAKVLRVTIISAPKV 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g02176 363 SUPERFAMILY Multidrug resistance efflux transporter EmrE 202 307 - -
Vifa5g02176 363 SUPERFAMILY Multidrug resistance efflux transporter EmrE 25 131 - -
Vifa5g02176 363 Pfam EamA-like transporter family 14 128 IPR000620 GO:0016020
Vifa5g02176 363 Pfam EamA-like transporter family 164 302 IPR000620 GO:0016020
Vifa5g02176 363 PANTHER WAT1-RELATED PROTEIN 25 315 IPR030184 GO:0016020|GO:0022857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g02176 Vifa-Chr5 724052771 724054785 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g02176 1 361 Nodulin-like Gene Family AT5G07050 53.671 2.39e-144 413
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g02176 - - gmx:100793545 562.377