Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g02173 ATGACACTCTCTCACCAAAATGAAGACTCTGAATCTCTACTCAACCAAATTGGAAATGAAGGTCTCACCAAACAGATTCTCACAAAAGGTGTCTCTTGGCAAACTCCATTCTCAGGAGATGAAGTTCAAGTTCATTTCCGAGGACAAATCGAAAATGGGCCATCTCTTGAATCCTGCTATGATAAAGGGTCCTCTTTTCGTTTCAAACTTGGCCAAGGTGAAGTTATCAAAGGTTGGGATGAAGGTGTTGCTACTATGAAAAAAGGGGAGAGAGCAATCTTCAAAATACCACCTGCGTTAGCGTATGGGGAAGTTGGTTCTCCACCGCTGATTCCTCCGAATGCAACTCTTGTTTATGAGATTGAAATGTTGTGTTGGAGTACCATTAGATACTTGACGGGCGATGGAGGAATCATGAAAAAGACGATAAGGGAAGGAGAAGGATGGGCTACTCCAAAAGAGCTTGATGAAGTCCTAGTGAAATATGAAGCAAAGCTTGAGAATGGGATGCTTATTAAGTCTGATAAAGGCGTGAATTTTAATGTCGGTGAGGGATATCTATGTCCAGCCATGAGCATAGCAGTAAAGACAATGAGAAAAGGCGAGGTGGCAGAGCTTTCTACGAAATTCTTCTTCATATATTTCTGCAAAGGAGAAGATGCTACAATTATTGATAGGAAAGGATCAAAGGAAGAACCTTTTGAGTTCACAATTCAAGAAGAACAAGTGCATGAGGGTCTAGAAAAAGCAATTATGACAATGAAAAAAGCAGAACAAGCTTTGGTGACTGTCAATGCTGAAAAAACCCTTTATTATGAAGTTGAATTAGTTGATTTCGTTAAGGAGAAACCATTTTGGAAAATGGATACTCAAGAGAAACTAGAAGCTTGTGAGTTGAAGAAGCATGATGGAAATCTTCTCTTCATGGCTAAAAGTTTTAGGCGCGCGTCAATGAAATATGAAAAGGCTGCAAAATACATTGAATTTGATCACACATTCAGCGACGACGAGAAGCGTCACGCTAACACATTGAGACTATCATGTAATTTGAACAATGCTGCTTGTAAGCTAAAATTGGAGGAGTACACAGGAGCTTCCAAGCTATGCACTAAGGTACTAGAACAAGATCCCTTAAATGTTAAGGCTCTTTACAGAAGATGCCAAGCATACCTTAAAACATCAGACTTGGAGAAAGCTGAAGCTGACATTAAAAGAGCATTGATTCTTGACCCAAATAATAGAGACATTAAACTTGAGTACAAAGAGCTCAAACTGAAGCAAAGGGAATACAATAAATATGAAGCTGACATCTTTAGCACAATGGTTTCAAAGATGAATTAG 1341 0.3915 MTLSHQNEDSESLLNQIGNEGLTKQILTKGVSWQTPFSGDEVQVHFRGQIENGPSLESCYDKGSSFRFKLGQGEVIKGWDEGVATMKKGERAIFKIPPALAYGEVGSPPLIPPNATLVYEIEMLCWSTIRYLTGDGGIMKKTIREGEGWATPKELDEVLVKYEAKLENGMLIKSDKGVNFNVGEGYLCPAMSIAVKTMRKGEVAELSTKFFFIYFCKGEDATIIDRKGSKEEPFEFTIQEEQVHEGLEKAIMTMKKAEQALVTVNAEKTLYYEVELVDFVKEKPFWKMDTQEKLEACELKKHDGNLLFMAKSFRRASMKYEKAAKYIEFDHTFSDDEKRHANTLRLSCNLNNAACKLKLEEYTGASKLCTKVLEQDPLNVKALYRRCQAYLKTSDLEKAEADIKRALILDPNNRDIKLEYKELKLKQREYNKYEADIFSTMVSKMN 446
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g02173 446 PANTHER PEPTIDYLPROLYL ISOMERASE 12 124 - -
Vifa5g02173 446 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 214 267 IPR001179 GO:0003755
Vifa5g02173 446 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 36 124 IPR001179 GO:0003755
Vifa5g02173 446 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 151 210 IPR001179 GO:0003755
Vifa5g02173 446 Gene3D - 211 284 IPR046357 GO:0003755
Vifa5g02173 446 SUPERFAMILY TPR-like 287 443 IPR011990 GO:0005515
Vifa5g02173 446 SUPERFAMILY FKBP-like 214 297 - -
Vifa5g02173 446 ProSiteProfiles TPR repeat profile. 380 413 IPR019734 GO:0005515
Vifa5g02173 446 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 155 280 IPR001179 GO:0003755
Vifa5g02173 446 Coils Coil 247 267 - -
Vifa5g02173 446 Gene3D - 128 210 IPR046357 GO:0003755
Vifa5g02173 446 Gene3D Tetratricopeptide repeat domain 285 440 IPR011990 GO:0005515
Vifa5g02173 446 SUPERFAMILY FKBP-like 18 125 - -
Vifa5g02173 446 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 39 127 IPR001179 GO:0003755
Vifa5g02173 446 Gene3D - 2 127 IPR046357 GO:0003755
Vifa5g02173 446 FunFam Peptidyl-prolyl cis-trans isomerase 15 127 - -
Vifa5g02173 446 SUPERFAMILY FKBP-like 132 219 - -
Vifa5g02173 446 Pfam Tetratricopeptide repeat 380 413 IPR001440 GO:0005515
Vifa5g02173 446 Coils Coil 416 436 - -
Vifa5g02173 446 SMART tpr_5 297 330 IPR019734 GO:0005515
Vifa5g02173 446 SMART tpr_5 346 379 IPR019734 GO:0005515
Vifa5g02173 446 SMART tpr_5 380 413 IPR019734 GO:0005515
Vifa5g02173 446 FunFam Peptidylprolyl isomerase 285 440 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g02173 Vifa-Chr5 722478992 722492014 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g02173 20 445 Calmodulin-binding Proteins AT3G25230 42.270 2.09e-135 399
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g02173 - - psat:127126483 462.996
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa5g02173 5 722478992 722492014 Vifa5g02173 5 722478992 722492014 ECH