Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g02164 ATGGAGAATCAAAACAAGAGAAAGTCGATCATGGTCGAGGAGGGTGATTCAACTCAGAAAATTGCTCGTTACTCATGTGCTTTTTGTGAAAAAACATATGAAACTCGTCAAGCACTAGGAGGACATCAACGTGCTCACAAACACGAGCGAGATGTCATATATGGAATTAAGCCTAGGTCAATCCCTCATCATCCAAGAGGAAAATCGAGCTTTAGTACTGGAGCTTGTAAGGTTGATATGAAAAATATCAATGGATGGGAAATACCAAAGAGAGATGAAGTGAAAGAGGCTGATCATGATCAAAATAGCGCAAAATCTGAATTTAAGTTTGTTTTGCTTTCCATGACAAATGCTCAAATCAATGGGTCAGGGAGTCAACAAATTCCCAGGACTGAAATTGACTTTGGTCTAGTTTCAAAGAGGAATGCTAATAATGATTCTCATGATGATGTCAAGGAGACTAATTCCAATTTAATTGATTAG 483 0.3789 MENQNKRKSIMVEEGDSTQKIARYSCAFCEKTYETRQALGGHQRAHKHERDVIYGIKPRSIPHHPRGKSSFSTGACKVDMKNINGWEIPKRDEVKEADHDQNSAKSEFKFVLLSMTNAQINGSGSQQIPRTEIDFGLVSKRNANNDSHDDVKETNSNLID 160
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g02164 160 MobiDBLite consensus disorder prediction 141 160 - -
Vifa5g02164 160 MobiDBLite consensus disorder prediction 143 160 - -
Vifa5g02164 160 ProSiteProfiles Zinc finger C2H2 type domain profile. 24 51 IPR013087 -
Vifa5g02164 160 SUPERFAMILY beta-beta-alpha zinc fingers 23 51 IPR036236 -
Vifa5g02164 160 ProSitePatterns Zinc finger C2H2 type domain signature. 26 48 IPR013087 -
Vifa5g02164 160 Gene3D Classic Zinc Finger 2 69 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g02164 Vifa-Chr5 719223517 719223999 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g02164 24 51 C2H2 Transcription Factor Family AT5G27880 64.286 1.01e-07 48.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g02164 - - psat:127130587 253.062