Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g02148 ATGGAGGAACGACAGCCTGAACAAGACCAACACTGCCAGGTCATCACTCTCGGAACTCATAACCCCCTCCTCCCGAGACCCCAATTGGACGACGAAGACAACGGCGGATGCGCCTATTCAAGGGCGGTTCTCGTCGTCGACATGGTCTGGAACCTCGCCTTCGTGCTTGTCGCCGCCGCCGTCATCCTATCCACGCTCGCCGAGCGTCCTTCCACTCCTCTGAGACTTTGGCTCTGTGGATACGCCTTGGAGTGCGTTCTCCATGTCGCTTTTGTTTACTCTGAATATCGTCGTGATTCCTTCTCTCACACTCCTTACAGCATTGCGAAGAAGTTAGAGCCTATGAACACACTTGCATCATCTGTTTGGTGGGTTTTTGGATTTTATTGGATTGTTGTCGGTGGCCAACCACTTCTTGAAGATTCTCCGCGACTCTACTGGTTAACAGTGGTCTTTCTAGCCTTTGACGTATTTTTTATTATCTTTTGCATTGGGATGGCATGTATAGTTTTCTTTGCTCTCTTCTGCATCATCCCAATAATAGCTTTAGCTTATGCGTTAAGAATCAGAGAAGGTGCTTCAGAAGACGATATCAGGTCACTTCCTATGTATAGGCTTATGGTTGATGACAACAACAACAATCAACTTGTTAAAGCAAGAACCAGTTCATACAATCAAAGCCATATCACTGAACTATCTCTTCATCCCGATGATTCTGAGTGTTGTATCTGCCTAAGTACATATGTTGACGGAACAGAACTGTATCGCCTTCCTTGTACCCACCATTTTCACTGTGGATGCATCAGCCGATGGCTTCGGACAAAAGCAACTTGCCCGCTCTGCAAATTTAATATTCGAAGAGCTGACACATTGGTTTAA 879 0.463 MEERQPEQDQHCQVITLGTHNPLLPRPQLDDEDNGGCAYSRAVLVVDMVWNLAFVLVAAAVILSTLAERPSTPLRLWLCGYALECVLHVAFVYSEYRRDSFSHTPYSIAKKLEPMNTLASSVWWVFGFYWIVVGGQPLLEDSPRLYWLTVVFLAFDVFFIIFCIGMACIVFFALFCIIPIIALAYALRIREGASEDDIRSLPMYRLMVDDNNNNQLVKARTSSYNQSHITELSLHPDDSECCICLSTYVDGTELYRLPCTHHFHCGCISRWLRTKATCPLCKFNIRRADTLV 292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g02148 292 SMART ring_2 241 281 IPR001841 -
Vifa5g02148 292 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 190 287 IPR013083 -
Vifa5g02148 292 ProSiteProfiles Zinc finger RING-type profile. 241 282 IPR001841 -
Vifa5g02148 292 PANTHER TARGET OF ERK KINASE MPK-1 24 286 - -
Vifa5g02148 292 Pfam Ring finger domain 240 282 IPR001841 -
Vifa5g02148 292 SUPERFAMILY RING/U-box 232 286 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g02148 Vifa-Chr5 715617787 715620380 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g02148 31 289 C3H Transcription Factor Family AT1G68070 44.599 6.23e-85 256
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g02148 - - tpra:123888220 506.908