Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g02144 ATGGACAATAACGTGGGTCAAGATTCATTTGATAAGTCTAGGGTTTTAAATGTTAAGCCATTGAGGACTCTTGTTCCTGTGTTCCCTTCACCATCTAATCCTTCTTCATCATCAACTCCACAAGGTGGTGCTCCTTTTGTTTGTGCTTCTCCTGCTGGTCCTTTTCCAACTGGTGTTGCGCCTTTTTATCCATTCTTTGTTTCGCCGGAATCTCAGAGGCTTTCCGAACAGAATGCACCGAACCCAACCCCGACCCCGATATCTACTGCTGTTCCGATTAATTCATTCAAGACCCCACCTCCGGCGACAAATGGAGATGTTGGTTCGTCAAGGAGGACTAGCCGGAATCGCGCTGCGCATCTCACGGAGGAAGAAGGGTACAATATTGCTGAGATGAATGAACTTGATGTAGAAGATGGAACTGGGAATGGGAGTTTGAAACGCAAGAGGGGAAGACCGAAGCGTGTTAGCGGTGCTGGTACTGGTACTGGTTCTGGTGTTGGTGGTGTGGTTCCGGCTGATGTTGATCTGGATGTGGTGGCTAATGATATTATTCAATCAATTAACCCCATGGTTTTTGATGTTATAAATCATCCGGATGGTAGCAGGGACTCAGTTTCACATACACTTATGATATATGAAGTGATGCGAAGAAAGCTTGGACAAATTGAAGAGTCAACTAAGGACACTCATGGAGCTAAGCGGCCTGATTTGAAGGCAGGCACAGTTATGATGACCAAAGGGGTTAGGAGTAACAGCAAGAAAAGGATTGGAATTGTGCCTGGTGTTGAGGTTGGGGATATTTTCTTTTTCCGATTTGAATTGTGCTTAGTGGGATTGCATGCACCTTCTATGGCTGGAATTGATTATCTGGGTTCCAAAGCAAGTCAAGAGGAAGAGCCATTGGCTGTTAGTATTGTCTCATCTGGAGGGTATGAAGATAATACTGACGATGGGGATGTGCTGATTTACAGTGGCCAAGGTGGAGTTAATCGCGAGAAGGGAGCAAGTGATCAAAAGCTTGAAAGGGGTAATCTTGCAATGGAGAAGAGCATGCATAAAGGTAATGATGTGAGAGTAATTAGAGGTTTGAAGGATGTAATGCATCCATCAGGGAAGGTATATGTCTATGACGGTATTTACAAGATTCAGGATTCATGGGTGGAGAAAGCAAAGTCCGGTTTTAATGTATTCAAGTATAAATTAGTAAGGATGCCCGGACAGCCTAAAGCATATTCAACATGGAAATCCGTTCAACAATGGACTGATAAGTCGGCTCCAAGAACCGGGGTCATATTGCCTGATCTTACTTCTGGGGCTGAAAAAGTGCCTGTTTGTCTTGTCAACGATGTTGATAACGAGAAGGGCCCTGCATATTTCACTTATATCCCCACTCTCAAGAATTCGAGAGCAATTGCTCCTGAGGAACCTACTGCTGGATGTTCTTGTATTGGTGGATGTCAACCTGGAAATTACAACTGTTCCTGCATTCAAAAGAATGGAGGTTTACTTCCGTATTCTGCTGCTGGGTTAGTCGCAGATCTAAAATCCGTGATACACGAGTGTGGTCCTTCTTGTCAATGTCCTTCTACTTGCCGAAACCGGGTTTCCCAAGTTGGCCTGAAATTTCGTTTGGAGGTGTTTAGAACCAAGAATAAAGGTTGGGGTCTAAGATCGTGGGATGCTATTCGAGCTGGAACTTTTATATGTGAGTATGCAGGGGAAGTCATAGACAGTGCTAGAGTGGAGATGCTTGGTGGTGACAATGAAGACGAGTACATTTTTGATTCCACACGCATCTATCAGCAGCTGGAAGTGTTTCCTGCTGACATTGAAGCTCCGAAGATCCCATCCCCGCTTTATATAACGGCAAAAAATGAAGGAAATGTTGCTCGGTTTATGAATCATAGCTGCTCTCCAAATGTGTTGTGGCGTCCGATTGTACGTGAAAATAAACATGAATCAGATCTCCATATTGCTTTCTTTGCAATTAGGCACATCCCTCCCATGGTGGAGTTAACTTATGATTATGGGATAAACCTTCCTCTAAAAGCTGGTCAGAGGAAAAAGAAATGCTTATGCGGATCTGTGAAATGCAGGGGTTACTTTTGTTAA 2115 0.4402 MDNNVGQDSFDKSRVLNVKPLRTLVPVFPSPSNPSSSSTPQGGAPFVCASPAGPFPTGVAPFYPFFVSPESQRLSEQNAPNPTPTPISTAVPINSFKTPPPATNGDVGSSRRTSRNRAAHLTEEEGYNIAEMNELDVEDGTGNGSLKRKRGRPKRVSGAGTGTGSGVGGVVPADVDLDVVANDIIQSINPMVFDVINHPDGSRDSVSHTLMIYEVMRRKLGQIEESTKDTHGAKRPDLKAGTVMMTKGVRSNSKKRIGIVPGVEVGDIFFFRFELCLVGLHAPSMAGIDYLGSKASQEEEPLAVSIVSSGGYEDNTDDGDVLIYSGQGGVNREKGASDQKLERGNLAMEKSMHKGNDVRVIRGLKDVMHPSGKVYVYDGIYKIQDSWVEKAKSGFNVFKYKLVRMPGQPKAYSTWKSVQQWTDKSAPRTGVILPDLTSGAEKVPVCLVNDVDNEKGPAYFTYIPTLKNSRAIAPEEPTAGCSCIGGCQPGNYNCSCIQKNGGLLPYSAAGLVADLKSVIHECGPSCQCPSTCRNRVSQVGLKFRLEVFRTKNKGWGLRSWDAIRAGTFICEYAGEVIDSARVEMLGGDNEDEYIFDSTRIYQQLEVFPADIEAPKIPSPLYITAKNEGNVARFMNHSCSPNVLWRPIVRENKHESDLHIAFFAIRHIPPMVELTYDYGINLPLKAGQRKKKCLCGSVKCRGYFC 704
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g02144 704 ProSiteProfiles SET domain profile. 543 678 IPR001214 GO:0005515
Vifa5g02144 704 SUPERFAMILY SET domain 419 684 IPR046341 -
Vifa5g02144 704 SMART set_7 543 684 IPR001214 GO:0005515
Vifa5g02144 704 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETMAR 104 696 - -
Vifa5g02144 704 MobiDBLite consensus disorder prediction 71 164 - -
Vifa5g02144 704 Pfam SAD/SRA domain 257 408 IPR003105 -
Vifa5g02144 704 SMART G9a_1 253 408 IPR003105 -
Vifa5g02144 704 ProSiteProfiles Pre-SET domain profile. 479 540 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Vifa5g02144 704 SMART preset_2 433 527 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Vifa5g02144 704 MobiDBLite consensus disorder prediction 71 115 - -
Vifa5g02144 704 Pfam Pre-SET motif 437 535 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Vifa5g02144 704 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 16 703 IPR025794 GO:0016571
Vifa5g02144 704 ProSiteProfiles YDG domain profile. 258 404 IPR003105 -
Vifa5g02144 704 Pfam SET domain 554 678 IPR001214 GO:0005515
Vifa5g02144 704 Gene3D SET domain 425 703 IPR046341 -
Vifa5g02144 704 SUPERFAMILY PUA domain-like 240 422 IPR015947 -
Vifa5g02144 704 Gene3D - 240 424 IPR036987 -
Vifa5g02144 704 ProSiteProfiles Post-SET domain profile. 688 704 IPR003616 -
Vifa5g02144 704 FunFam Histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH5 241 423 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g02144 Vifa-Chr5 714716194 714718308 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g02144 8 703 Su(var)3-9 homologs AT1G73100 48.811 0.0 635
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Vifa5g02144 SAD_SRA 1.1e-50 CL0178
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g02144 K24405 - gmx:100805932 1122.84