Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g02139 ATGGAACAACGGAGTAGGTTGGTTTTCGTATCAGATTTTGTTCTATCTTTCATGTGGGTATGTTCTGGTGTTGTCGTTCGGTTAATCGTCTTCAAAATTCTGGGTTTTTCTCATACCCATGTTGCTGAGATTGTGAAGCTTTTGTTTTCCATAGCCAACATGTTCTTCTTTGCTTTGCTTTCCAAGGTTTCTCGTGGTGGGGTTTATAATCCTCTCACTGTTTTGGCTGATGCTATCTCTGGGGATTTTCGGAACTTTCTTTTTTGTGTTGGTTCTAGAATTCCTGCTCAGGTGTTTGGATCTATTGTTGGAGTTAAATTTCTTATATACACCATTCCCGAAGTAGGACAGGGTCCGCGTTTGAATGTTGACATTCATCAAGGATCACTAACAGAAGGATTACTAACATTTGTAATTGTAAGCATTTCACTTGGGCTCGCCGCAACAAAAATCCAAGGAAATTTCTTCATGAAGACTTGGATTTCCAGTCTCTCCAAGTTAACACTTCATATACTCGGTTCTGATCTCACCGGTGGTTGTATGAACCCCGCAGCTGTGATGGGATGGGCTTATGCTCGAGGGGATCACATAACAAAAGAGCACCTCCTTGTTTACTGGCTTGCTCCCATAGAGGGAACTATTTTTGCAGTGTGGATATTCAAATGGCTTTTCCGGCCTGTTGACAAAGATAAAACAGGCTCGAAAAGAAAATCAGATTGA 720 0.4139 MEQRSRLVFVSDFVLSFMWVCSGVVVRLIVFKILGFSHTHVAEIVKLLFSIANMFFFALLSKVSRGGVYNPLTVLADAISGDFRNFLFCVGSRIPAQVFGSIVGVKFLIYTIPEVGQGPRLNVDIHQGSLTEGLLTFVIVSISLGLAATKIQGNFFMKTWISSLSKLTLHILGSDLTGGCMNPAAVMGWAYARGDHITKEHLLVYWLAPIEGTIFAVWIFKWLFRPVDKDKTGSKRKSD 239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g02139 239 Pfam Major intrinsic protein 9 220 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vifa5g02139 239 PRINTS Major intrinsic protein family signature 7 26 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vifa5g02139 239 PRINTS Major intrinsic protein family signature 131 149 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vifa5g02139 239 PRINTS Major intrinsic protein family signature 203 223 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vifa5g02139 239 PRINTS Major intrinsic protein family signature 163 185 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vifa5g02139 239 PRINTS Major intrinsic protein family signature 89 108 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vifa5g02139 239 PANTHER AQUAPORIN SIP2-1-RELATED 7 239 IPR044226 GO:0015267
Vifa5g02139 239 SUPERFAMILY Aquaporin-like 8 227 IPR023271 -
Vifa5g02139 239 Gene3D Glycerol uptake facilitator protein. 6 239 IPR023271 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g02139 Vifa-Chr5 713534860 713537091 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g02139 10 239 Major Intrinsic Protein MIP AT3G56950 61.472 4.32e-102 295
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g02139 K09875 - gmx:100786138 360.533