Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g02138 ATGGAACGACGAAGTAAGTTGGTTTTTGTATCAGATTTTGCTCTATCTTTCATGTGGGTATGTTCTGGTGTTCTCGTTCGATTATTCGTCTTCAAAATTCTGGGTTCTTCTAATACTCATGTTGCTGAGTTTATGAAACTTTCATTTTCCATAGCCAACATGTTCTTGTTTGCTTTCCTAGCCAAGGTTTCTCGTGGCGGTGCCTACAATCCTCTACCTGTTTTGGTTGATGCTATCTCTGGAGATTTTTGTAACTTCTTTTTCTGCGTTGGTTTCAGAATTCCTGCACAGGTGGTTGGATTTATTGTTGGAGTAAAACTTGTTATTGGTGCTATTCCTGATGTAGGAAGTGGACCGCGTTTGAATGTTGATATTCTTCAAGGAGCATTGACAGAAGGATTACTAACATTTGTAATTGTAAGCATTTCACTTGGGCTTAACACAACAAAAATCCATGGAAATTTCTTCATGAAAACATGGATTTCCAGCCTATCCAAGATAACACTACATATACTTGGCTCTAATCTAACCGGTGGTTGTATGAATCCGGCTTCTGTAATGGCATGGACTTATGCTCGAGGAGATCACATAACAAAGGAACACATCTTGGTATATTGGATTGCCCCTATAAAGGCAACTATTCTAGCAACGTGTACATTCAAGTTATTAGTACGACGTCAAAAAACAGGCTCAAAAAGTAAATCAGATTGA 711 0.384 MERRSKLVFVSDFALSFMWVCSGVLVRLFVFKILGSSNTHVAEFMKLSFSIANMFLFAFLAKVSRGGAYNPLPVLVDAISGDFCNFFFCVGFRIPAQVVGFIVGVKLVIGAIPDVGSGPRLNVDILQGALTEGLLTFVIVSISLGLNTTKIHGNFFMKTWISSLSKITLHILGSNLTGGCMNPASVMAWTYARGDHITKEHILVYWIAPIKATILATCTFKLLVRRQKTGSKSKSD 236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g02138 236 Gene3D Glycerol uptake facilitator protein. 6 236 IPR023271 -
Vifa5g02138 236 PRINTS Major intrinsic protein family signature 203 223 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vifa5g02138 236 PRINTS Major intrinsic protein family signature 131 149 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vifa5g02138 236 PRINTS Major intrinsic protein family signature 163 185 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vifa5g02138 236 PRINTS Major intrinsic protein family signature 89 108 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vifa5g02138 236 SUPERFAMILY Aquaporin-like 8 227 IPR023271 -
Vifa5g02138 236 PANTHER AQUAPORIN SIP2-1-RELATED 7 232 IPR044226 GO:0015267
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g02138 Vifa-Chr5 712916045 712916987 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g02138 10 236 Major Intrinsic Protein MIP AT3G56950 54.978 6.94e-87 256
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g02138 K09875 - gmx:100786138 323.168