Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g02137 ATGCCCACCGCCAAATTATTCATCTCTCTCCTCTGTTTCTCTCTCCTCACTCTCTCCGTCACCGCCCGCCCCTACGTCCTCGTCCTCTCCCAAGAAGACTTCAAAGACGAACCCCCTTCCGATCCCGATTCCTCCCCCGAGTGGGACGAGTTCGGCGACTCCGACTCTCACAAATCCGAAGAGGATCTCGACCCTGGATCATGGCGCCAAATCTTCGAACCAACCTCCACCCAACCGCAACCTCAACCTCAATCCGATACGGAGGCTCTCTACTACTCCGCCGTGACCAAGCTTATGACAGGAGACGCGAGGCTAATCGAAGAAGGCTCTGGTGAGATTGAGACGGCTGCAGAGTCTGGTTACCCGGAGGCACAATCAGTGTTAGGGTTTTTGTGGGGAATGGGGCTTTTGAGAGAGAGGAGTAAACAGAAAGCATTTGTTTATCATCATTTTGCTTCAGATGGTGGCAATATGCAATCCAAAATGGCTCTTGCTTATACCTACACTCGTCAAGATATGTTTGATAAATCGGTTAAGCTTTATGCTGAATTAGCAGAAGTGGCTGTCAATGGTTTTCTCATTTCCAAAGATTCTCCCGTCATTGAACCTATTAGGCTACTCAATGGAGCTGAAGAGAACAAAGAGGCACTTAGAAAATCTAAAGGGGAAGAGGATGAGGATTTTCAGATTCTCGAGTATCAGGCACAGAAAGGGAATGCTGCTTCTATGTACAAAGTGGGACTCTTTTACTACTTTGGGCTACGTGGATTGAGGCGTGACCATTCTAAGGCACTTTCGTGGTTCTTGAAGGCAGTGGAGAAGGGAGAGCCTCGCTCCATGGAGCTTCTCGGAGAGATATATGCCAGGGGAGCCGGTGTTGAGAGGAACTATACAAAAGCCTTTGAATGGCTTACTCTAGCATCTAAGCATCACCTCTACTCTGCTTATAATGGGATTGGTTATTTGTATGTCAAAGGCTATGGAGTCGACAGCAAAAATTACACTACAGCAAAAGAGTATTTTGAAAAGGCTGCTGAAAATGACGAGGTTGGTGGCCATTATAACCTAGAAGAACGTTCCATTGGGGAGTGGGTTATTTGCATGAAAATAAACCATCACCCATTATTCACCGTGATCTCGAGCCTTCGCCGCTATGTGGCTCCTGAGGTTTTTAATCAAGAGGAATATGACACTAAAGTGGATGTGTTCTCATTTGCACTAATTCTACAAGAGGTTCAATGGAATTCCAGAGGTCAACCAATCAAGCATAATAGCAAGACTTTTTCTAGTTTCATTGGTGTCACAGTTCGTCGGAGAAGTTAA 1323 0.4626 MPTAKLFISLLCFSLLTLSVTARPYVLVLSQEDFKDEPPSDPDSSPEWDEFGDSDSHKSEEDLDPGSWRQIFEPTSTQPQPQPQSDTEALYYSAVTKLMTGDARLIEEGSGEIETAAESGYPEAQSVLGFLWGMGLLRERSKQKAFVYHHFASDGGNMQSKMALAYTYTRQDMFDKSVKLYAELAEVAVNGFLISKDSPVIEPIRLLNGAEENKEALRKSKGEEDEDFQILEYQAQKGNAASMYKVGLFYYFGLRGLRRDHSKALSWFLKAVEKGEPRSMELLGEIYARGAGVERNYTKAFEWLTLASKHHLYSAYNGIGYLYVKGYGVDSKNYTTAKEYFEKAAENDEVGGHYNLEERSIGEWVICMKINHHPLFTVISSLRRYVAPEVFNQEEYDTKVDVFSFALILQEVQWNSRGQPIKHNSKTFSSFIGVTVRRRS 440
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g02137 440 PANTHER ERAD-ASSOCIATED E3 UBIQUITIN-PROTEIN LIGASE COMPONENT HRD3A-RELATED 4 356 IPR044623 GO:0030433
Vifa5g02137 440 MobiDBLite consensus disorder prediction 33 86 - -
Vifa5g02137 440 SUPERFAMILY Protein kinase-like (PK-like) 375 414 IPR011009 -
Vifa5g02137 440 MobiDBLite consensus disorder prediction 50 67 - -
Vifa5g02137 440 MobiDBLite consensus disorder prediction 70 86 - -
Vifa5g02137 440 Gene3D Tetratricopeptide repeat domain 211 359 IPR011990 GO:0005515
Vifa5g02137 440 SUPERFAMILY HCP-like 113 186 - -
Vifa5g02137 440 SUPERFAMILY HCP-like 221 357 - -
Vifa5g02137 440 Coils Coil 207 227 - -
Vifa5g02137 440 Gene3D Transferase(Phosphotransferase) domain 1 360 432 - -
Vifa5g02137 440 SMART sel1 122 157 IPR006597 -
Vifa5g02137 440 SMART sel1 277 312 IPR006597 -
Vifa5g02137 440 SMART sel1 240 276 IPR006597 -
Vifa5g02137 440 SMART sel1 313 349 IPR006597 -
Vifa5g02137 440 Pfam Sel1 repeat 314 348 IPR006597 -
Vifa5g02137 440 Pfam Sel1 repeat 278 310 IPR006597 -
Vifa5g02137 440 Pfam Sel1 repeat 240 275 IPR006597 -
Vifa5g02137 440 Pfam Sel1 repeat 122 157 IPR006597 -
Vifa5g02137 440 Gene3D Tetratricopeptide repeat domain 111 196 IPR011990 GO:0005515
Vifa5g02137 440 FunFam ERAD-associated E3 ubiquitin-protein ligase component HRD3A 206 316 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g02137 Vifa-Chr5 711481757 711486404 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g02137 352 417 MAP Kinase Kinase Kinase AT3G58760 45.714 9.08e-11 61.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g02137 K14026 - psat:127101456 669.077