Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g02136 ATGCCCACCGCCAAATTATTCATCTCTCTCCTCTGTTTCTCTCTCCTCACTCTCTCCGTCACCGCCCGCCCCTACGTCCTCGTCCTCTCCCAAGAAGACTTCAAAGACGAACCCCCTTCCGATCCCGATTCCTCCCCCGAGTGGGACGAGTTCGGCGACTCCGACTCTCACAAATCCGAAGAGGATCTCGACCCTGGATCATGGCGCCAAATCTTCGAACCAACCTCCACCCAACCGCAACCTCAACCTCAATCCGATACGGAGGCTCTCTACTACTCCGCCGTGACCAAGCTTATGACAGGAGACGCGAGGCTAATCGAAGAAGGCTCTGGTGAGATTGAGACGGCTGCAGAGTCTGGTTACCCGGAGGCACAATCAGTGTTAGGGTTTTTGTGGGGAATGGGGCTTTTGAGAGAGAGGAGTAAACAGAAAGCATTTGTTTATCATCATTTTGCTTCAGATGGTGGCAATATGCAATCCAAAATGGCTCTTGCTTATACCTACACTCGTCAAGATATGTTTGATAAATCGGTTAAGCTTTATGCTGAATTAGCAGAAGTGGCTGTCAATGGTTTTCTCATTTCCAAAGATTCTCCCGTCATTGAACCTATTAGGCTACTCAATGGAGCTGAAGAGAACAAAGAGGCACTTAGAAAATCTAAAGGGGAAGAGGATGAGGATTTTCAGATTCTCGAGTATCAGGCACAGAAAGGGAATGCTGCTTCTATGTACAAAGTGGGACTCTTTTACTACTTTGGGCTACGTGGATTGAGGCGTGACCATTCTAAGGCACTTTCGTGGTTCTTGAAGGCAGTGGAGAAGGGAGAGCCTCGCTCCATGGAGCTTCTCGGAGAGATATATGCCAGGGGAGCCGGTGTTGAGAGGAACTATACAAAAGCCTTTGAATGGCTTACTCTAGCATCTAAGCATCACCTCTACTCTGCTTATAATGGGATTGGTTATTTGTATGTCAAAGGCTATGGAGTCGACAGCAAAAATTACACTACAGCAAAAGAGTATTTTGAAAAGGCTGCTGAAAATGACGAGGTTGGTGGCCATTATAACCTAGGTGTCATGTTTCTCAAGGGGATTGGAGTGAAAAGAGATGTGCGAAGAACGTTCCATTGGGGAGTGGGTTATTTGCATGAAAATAAACCATCACCCATTATTCACCGTGATCTCGAGCCTTCTAATATATTGAGGGATGATTTCGGCCACCTAAAAGTTGCAGACTTTGGAGTTAGCAAGTTGCTAACAGTTAAAGACAAGCCTCTAACTTTCCAAGATACTTCTTGCCGCTATGTGGCTCCTGAGGTTTTTAATCAAGAGGAATATGACACTAAAGTGGATGTGTTCTCATTTGCACTAATTCTACAAGAGATCCAGGGAGAGAAGGCAACCCTATGCAGACCATCCCTGTTTCTTCTATTTGTCTACATTGTTCAATGGAATTCCAGAGGTCAACCAATCAAGCATAATAGCAAGACTTTTTCTAGTTTCATTGGTGTCACAGTTCGTCGGAGAAGTTAA 1530 0.4562 MPTAKLFISLLCFSLLTLSVTARPYVLVLSQEDFKDEPPSDPDSSPEWDEFGDSDSHKSEEDLDPGSWRQIFEPTSTQPQPQPQSDTEALYYSAVTKLMTGDARLIEEGSGEIETAAESGYPEAQSVLGFLWGMGLLRERSKQKAFVYHHFASDGGNMQSKMALAYTYTRQDMFDKSVKLYAELAEVAVNGFLISKDSPVIEPIRLLNGAEENKEALRKSKGEEDEDFQILEYQAQKGNAASMYKVGLFYYFGLRGLRRDHSKALSWFLKAVEKGEPRSMELLGEIYARGAGVERNYTKAFEWLTLASKHHLYSAYNGIGYLYVKGYGVDSKNYTTAKEYFEKAAENDEVGGHYNLGVMFLKGIGVKRDVRRTFHWGVGYLHENKPSPIIHRDLEPSNILRDDFGHLKVADFGVSKLLTVKDKPLTFQDTSCRYVAPEVFNQEEYDTKVDVFSFALILQEIQGEKATLCRPSLFLLFVYIVQWNSRGQPIKHNSKTFSSFIGVTVRRRS 509
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g02136 509 Gene3D Tetratricopeptide repeat domain 102 200 IPR011990 GO:0005515
Vifa5g02136 509 SUPERFAMILY HCP-like 113 186 - -
Vifa5g02136 509 SMART sel1 122 157 IPR006597 -
Vifa5g02136 509 SMART sel1 277 312 IPR006597 -
Vifa5g02136 509 SMART sel1 240 276 IPR006597 -
Vifa5g02136 509 SMART sel1 350 384 IPR006597 -
Vifa5g02136 509 SMART sel1 313 349 IPR006597 -
Vifa5g02136 509 MobiDBLite consensus disorder prediction 70 86 - -
Vifa5g02136 509 Gene3D Tetratricopeptide repeat domain 202 312 IPR011990 GO:0005515
Vifa5g02136 509 Gene3D Tetratricopeptide repeat domain 313 375 IPR011990 GO:0005515
Vifa5g02136 509 FunFam ERAD-associated E3 ubiquitin-protein ligase component HRD3A 206 316 - -
Vifa5g02136 509 Pfam Sel1 repeat 122 157 IPR006597 -
Vifa5g02136 509 Pfam Sel1 repeat 240 275 IPR006597 -
Vifa5g02136 509 Pfam Sel1 repeat 314 348 IPR006597 -
Vifa5g02136 509 Pfam Sel1 repeat 353 376 IPR006597 -
Vifa5g02136 509 Pfam Sel1 repeat 278 310 IPR006597 -
Vifa5g02136 509 ProSiteProfiles Protein kinase domain profile. 229 509 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa5g02136 509 PANTHER ERAD-ASSOCIATED E3 UBIQUITIN-PROTEIN LIGASE COMPONENT HRD3A-RELATED 4 372 IPR044623 GO:0030433
Vifa5g02136 509 SUPERFAMILY Protein kinase-like (PK-like) 376 501 IPR011009 -
Vifa5g02136 509 MobiDBLite consensus disorder prediction 33 86 - -
Vifa5g02136 509 MobiDBLite consensus disorder prediction 50 67 - -
Vifa5g02136 509 Gene3D Transferase(Phosphotransferase) domain 1 376 501 - -
Vifa5g02136 509 Coils Coil 207 227 - -
Vifa5g02136 509 SMART serkin_6 281 501 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa5g02136 509 Pfam Protein kinase domain 376 462 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa5g02136 509 SUPERFAMILY HCP-like 221 376 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g02136 Vifa-Chr5 711481757 711486404 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g02136 377 461 MAP Kinase Kinase Kinase AT4G18950 80.233 3.21e-38 143
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-5 Vifa5g02136 Pkinase 2.5e-20 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g02136 K14026 - psat:127101456 696.812