Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g02098 ATGGGAAGACCTCCTTGCTGTGACAAAGTTGGCATCAAGAAAGGTCCATGGACACCTGAAGAAGATATCATCCTTGTTTCTTACATCCAAGAACATGGTCCAGGAAATTGGAGATCTGTTCCTACTAATACAGGTTTGTCAAGGTGCAGCAAAAGTTGCAGACTTAGATGGACAAATTATCTGAGGCCAGGAATCAAGAGAGGAAACTTCACTTCTCATGAAGAAGGAATGATTATTCATTTGCAAGCTCTTCTTGGTAACAAATGGGCAGCCATAGCTTCATACCTTCCACAAAGAACAGACAATGATATAAAGAATTATTGGAACACACATCTAAAGAAAAAGCTCAACAAATTTCAAGCTGCAGCTTTAGAGTCATCAAACTCGACAAATTATGTGTCTAAAAGTTTTAGTGACAGAAGTTTAGATATTACCAACAACCATGCTTCGTCACTAAAGCTTAATAGTAATAATCAAAATTCTCTTCAATCTTCTTCATCAACATATGCTTCAAGCACTGAGAATATTTCAAGGCTCTTAGAAGGTTGGATGAGATCTTCACCAAACTCTCAACAACAGATCAAAGGAAATTACCAATATGGTCATCATGATCATCAAGAGTTTCAAAGCAATGATGATAATGTTATTATTGATGATGATAATAATAGCTTTGAAAATAATGGTAATTTGTTGGTGAAGTCTGCTTCAGTTCCAGCTGATTTAAACCTTCAAAGCTATCATAATCATCATCAGGAGAAAACTAACAAAGATGAAATGGTTTCACATGATCAAGAGTTTGATTCTATTCTTTCATTTGAGAATCTCAACAATGGTGTTGCTTGGGACAAGTCAACTTGTGATTCTATGCCTGCTGAAAAGTGTTCTAATGCTGCCGCTTCTTCTTCTCAGAAGAGTATTAAGAATTTATGCAATGCTCCTCCTCCATTGTCATTTCTTGAGAAGTGGTTATTGGATGAAAATGTTGGTCATGTTGAAGAAATGATGGAATTATCATCTCCAATGTTCTAA 1029 0.3596 MGRPPCCDKVGIKKGPWTPEEDIILVSYIQEHGPGNWRSVPTNTGLSRCSKSCRLRWTNYLRPGIKRGNFTSHEEGMIIHLQALLGNKWAAIASYLPQRTDNDIKNYWNTHLKKKLNKFQAAALESSNSTNYVSKSFSDRSLDITNNHASSLKLNSNNQNSLQSSSSTYASSTENISRLLEGWMRSSPNSQQQIKGNYQYGHHDHQEFQSNDDNVIIDDDNNSFENNGNLLVKSASVPADLNLQSYHNHHQEKTNKDEMVSHDQEFDSILSFENLNNGVAWDKSTCDSMPAEKCSNAAASSSQKSIKNLCNAPPPLSFLEKWLLDENVGHVEEMMELSSPMF 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g02098 342 CDD SANT 69 112 IPR001005 -
Vifa5g02098 342 Gene3D - 13 66 - -
Vifa5g02098 342 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 66 116 IPR017930 -
Vifa5g02098 342 SMART sant 13 63 IPR001005 -
Vifa5g02098 342 SMART sant 66 114 IPR001005 -
Vifa5g02098 342 CDD SANT 16 61 IPR001005 -
Vifa5g02098 342 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 65 IPR017930 -
Vifa5g02098 342 Gene3D - 68 175 - -
Vifa5g02098 342 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Vifa5g02098 342 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Vifa5g02098 342 FunFam MYB-related transcription factor 13 66 - -
Vifa5g02098 342 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Vifa5g02098 342 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Vifa5g02098 342 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Vifa5g02098 342 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 227 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g02098 Vifa-Chr5 698088032 698089264 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g02098 1 125 MYB Transcription Factor Family AT5G62470 85.600 5.60e-81 249
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vifa5g02098 Myb_DNA-binding 1.8e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g02098 K09422 - gmx:100802204 408.297