Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g02084 ATGAGTGATATGGGTCTTTTCCCTTTAGCTCCTATTCCTTCTAACCCTGAAATGGGTTGTCCTCAGATTTTGAAACCCTCAATGTTTCAATCCAAAGAAGAAGAAGGGTACTTAAGTTTAGGTGTTCAGAGAAAAAACTTGTCTTTGAAACTTGGTGATGGTGTAGAACAAAAAAGGTCTCTTTCTGTGAAAACTGGTTACTCCAAGCTTTGTTCTAGAGGCCATTGGAGACCAGGTGAAGATGCAAAACTTAAAGAGCTTGTTGCTGAATATGGTCCTCAAAATTGGAACTTGATTGCGGAACATCTTCAAGGAAGATCAGGAAAAAGTTGCAGATTAAGGTGGTTCAATCAGCTAGATCCAAGGATAAACAGAAGCACTTTTTCTGAGGAGGAAGAGGAGAGGCTTTTAGCTTCTCATAAAATGTATGGTAACAAATGGGCTATGATTGCTAGACTATTTCCTGGAAGGACAGATAATGCAGTGAAGAATCATTGGCATGTAATCATGGCTAGGAGGCATAGGGAACAGTGTAGTGTGTATAGAAGGAGAAAGCCAGTTATTGAAAGTCTTTCCAAGGGTTTGAAATTGAGCCTTTCAAACAATGCAGCTAGTGATTCAAATTTGTCAAGTATAGATGGAAATGCCTCAACTTGTACTACTAATCTCTCACTCACTCCCTCTTCAGCTAAACTAAGTCCTCAACTGTTTGATAAGCCAGTAACTAATGTTCAAAATCACCAAAGCTATGGATCATTATTAGGTAAATCTAGAGAAAGTGGTGTGGCAACTAGTATTGACAAGTATTTAGGAGGTTGTAATAACCATGAAAAGGTGGAAAAGCTCAATGTAATAATGGATGTGGTCCAATCCAATTTTTCAGATTCAAACACATCAGAAGTATCAGTATCTGAGTCAGTTGGCACCAACAACAATAGGCCCAATATCTCAATTTCTGGTGAAAGTGTTAACAACAATATGCTACTAGCACCATTCATTGATTTTCTTGGAGTAGGAGCTAGGTAA 1026 0.384 MSDMGLFPLAPIPSNPEMGCPQILKPSMFQSKEEEGYLSLGVQRKNLSLKLGDGVEQKRSLSVKTGYSKLCSRGHWRPGEDAKLKELVAEYGPQNWNLIAEHLQGRSGKSCRLRWFNQLDPRINRSTFSEEEEERLLASHKMYGNKWAMIARLFPGRTDNAVKNHWHVIMARRHREQCSVYRRRKPVIESLSKGLKLSLSNNAASDSNLSSIDGNASTCTTNLSLTPSSAKLSPQLFDKPVTNVQNHQSYGSLLGKSRESGVATSIDKYLGGCNNHEKVEKLNVIMDVVQSNFSDSNTSEVSVSESVGTNNNRPNISISGESVNNNMLLAPFIDFLGVGAR 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g02084 341 PANTHER MYB PROTEIN-RELATED 73 228 - -
Vifa5g02084 341 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 120 174 IPR017930 -
Vifa5g02084 341 SUPERFAMILY Homeodomain-like 73 166 IPR009057 -
Vifa5g02084 341 SMART sant 72 121 IPR001005 -
Vifa5g02084 341 SMART sant 124 172 IPR001005 -
Vifa5g02084 341 FunFam MYB transcription factor 73 124 - -
Vifa5g02084 341 CDD SANT 76 117 IPR001005 -
Vifa5g02084 341 Pfam Myb-like DNA-binding domain 73 119 IPR001005 -
Vifa5g02084 341 Pfam Myb-like DNA-binding domain 125 168 IPR001005 -
Vifa5g02084 341 Gene3D - 127 187 - -
Vifa5g02084 341 CDD SANT 127 167 IPR001005 -
Vifa5g02084 341 Gene3D - 73 124 - -
Vifa5g02084 341 ProSiteProfiles Myb-like domain profile. 73 119 IPR001005 -
Vifa5g02084 341 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 73 119 IPR017930 -
Vifa5g02084 341 ProSiteProfiles Myb-like domain profile. 120 170 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g02084 Vifa-Chr5 691137358 691138841 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g02084 21 242 MYB Transcription Factor Family AT5G17800 51.931 1.18e-73 229
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vifa5g02084 Myb_DNA-bind_6 1.3e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g02084 K09422 - gmx:100791795 336.265
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa5g02084 5 691137358 691138841 Vifa5g02084 5 691137358 691138841 ECH