Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g02083 ATGGAAGATAAGATGCAACCTGACCCCCCCAACAACACTCCAAACCAACATGTTTCCGAGAAAAACGAACCGGTTAGGTCAAGGTGGACACCAAAACCAGAACAGATTCTCATACTTGAGTCCATCTTCAACAGTGGCATGGTGAATCCCCCCAAAGAAGAAACTATTAAGATAAGAAAACTTCTTGAGAAATTTGGCAACGTCGGTGATGCCAACGTCTTCTACTGGTTCCAAAACCGCCGGTCTAGATCTCGCCGCCGACAACGCCAGATGCAACAGGCCACACTTGATCAGCAAAAGAACCAGATGCTGATGATGCAACCTCAGCAAGTTGCTAATAATGGTGCAAGTGCAATTTCTTGTGATATGGTTCAAACCAACCCTACCATGGTTTTTGGTGATTCTTCTGGTTCTTCCTCTTCATCATGTGGTGGTGTTCTTGGTGGTCAACAAGGAATGGAGGGTTTCTTTTCGGTTTCTTCTCAAATGGGTTTCCTCGGAGCTGATCAAACTTTAGCTGCTTCATCAATTTTCAACCATCCTCTTTCTCCAAACTTGAATTATCACTCTGGATATGGAGGTGCTAGCGCTAGTGCTAGTGCTGTGACTGGATTGATAACAGTGTTTATCAATGGAATAGCTACAGAAGTTCAAGCGGGGCCTATAGACATGAAAACAGTATTTGGAGAAGATGTCATGTTAGTTCATTCCTCTGGTGTGCCAGTTCCTACAAATGAACATGGTATTTTGATTCAGAATTTGCACCATGGTGAAAGCTATTTTCTGGTATCAAAGTCAACACAAGTATGA 810 0.4321 MEDKMQPDPPNNTPNQHVSEKNEPVRSRWTPKPEQILILESIFNSGMVNPPKEETIKIRKLLEKFGNVGDANVFYWFQNRRSRSRRRQRQMQQATLDQQKNQMLMMQPQQVANNGASAISCDMVQTNPTMVFGDSSGSSSSSCGGVLGGQQGMEGFFSVSSQMGFLGADQTLAASSIFNHPLSPNLNYHSGYGGASASASAVTGLITVFINGIATEVQAGPIDMKTVFGEDVMLVHSSGVPVPTNEHGILIQNLHHGESYFLVSKSTQV 269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g02083 269 ProSiteProfiles 'Homeobox' domain profile. 22 87 IPR001356 GO:0003677
Vifa5g02083 269 Pfam Homeodomain 26 86 IPR001356 GO:0003677
Vifa5g02083 269 SUPERFAMILY Homeodomain-like 21 93 IPR009057 -
Vifa5g02083 269 Gene3D - 26 94 - -
Vifa5g02083 269 SMART HOX_1 24 91 IPR001356 GO:0003677
Vifa5g02083 269 MobiDBLite consensus disorder prediction 1 29 - -
Vifa5g02083 269 FunFam WUSCHEL-related homeobox 11 26 93 - -
Vifa5g02083 269 PANTHER WUSCHEL-RELATED HOMEOBOX 11 1 266 IPR044558 GO:0003700|GO:0048830
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g02083 Vifa-Chr5 690140327 690142486 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g02083 19 269 Wox Gene Family AT3G03660 49.624 1.06e-60 192
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-WOX Vifa5g02083 Homeodomain 8.9e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g02083 - - lang:109335690 268.085