Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g02081 ATGGCAGAGCCTGCATCCATCTATAAATTCCTGTCGAGAGAAGCTGCAAATAAACATTATTCAACCCGCAGTTTTCAGTGTCACTTCTGCCATCGCAAGTTCTTGTCTTCTCAAGCTCTTGGTGGCCATCAAAATGCACACAAACTCGAGAGAGCTGCTGCTAGAACATCAACCAAGCCACTCTATTTTCACTCTAGTTCTTCTCTCATTATCACAAACCTCACGCCCAAGCCCGATATAGAATCTGCTCGCTTCTTCAACAACAACAACTATCCTTACTTGCTTGAAGTTAAGCCTTTTCATCATCACCTCCATGCTGCAGGCGCATCCATAACTTCTCATACTGCTTCTACTCTTCCTACTCAACCTTCTGACCATGTCAATCTTGACCTCACCCTTCGTTTGTGA 408 0.4436 MAEPASIYKFLSREAANKHYSTRSFQCHFCHRKFLSSQALGGHQNAHKLERAAARTSTKPLYFHSSSSLIITNLTPKPDIESARFFNNNNYPYLLEVKPFHHHLHAAGASITSHTASTLPTQPSDHVNLDLTLRL 135
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g02081 135 Gene3D Classic Zinc Finger 7 70 - -
Vifa5g02081 135 ProSiteProfiles Zinc finger C2H2 type domain profile. 25 52 IPR013087 -
Vifa5g02081 135 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 14 110 IPR044246 GO:0009788
Vifa5g02081 135 ProSitePatterns Zinc finger C2H2 type domain signature. 27 47 IPR013087 -
Vifa5g02081 135 SUPERFAMILY beta-beta-alpha zinc fingers 22 52 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g02081 Vifa-Chr5 689159092 689159499 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g02081 23 135 C2H2 Transcription Factor Family AT5G57520 37.607 4.17e-13 60.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g02081 - - mtr:11430154 160.999