Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g02072 ATGAACATGTCTGAGACTGAGACAGAGAAGAATCCTGGTATTAAGCTGTTTGGATGGAAGATTCCGTTGCCGGAATGTCGAATTCCGATTAACTCTCCACCAATGGATACTTGCAGCACTACAAAGAAAACATTAGAGGAAAAACTTTCTGTGGAAAAAACCGAGCAACGAGATGATTCTTCCAATTCAATGGATAGTAAACAAGAGTCCCGAAGTAATACGCAGGAAAAAGAGCCGATAGTAAACTCGGAGCAAGCCGAAGATAACATGGAGTCGGGCGATACTGATCAAGATAAAATCTTGAAGAAACCGGACAAGATTGTTCAGTGTCCGCGGTGCAGAAGTTGGGACACCAAGTTTTGTTATTTCAACAACTATAATGTAAACCAACCTCGGCATTTCTGTAAGAATTGCCAGAGGTATTGGACTGCGGGCGGAACGATGAGAAATGTTCCTATAGGTGCTGGGAGGCGGAAGAATAAGCATCTCGCCTCTCAGTACAGGCAAGTTATAGTAAACTCGGATGGAATTCCGATCTCCAGGCAAGAAACTACGAGCTTATCCGGTCATCAGCGTGCGATGACGGATAATGAGACTGTGTTGAAATTTGGTCCGGATACTCCTCTCTGCGAATCAATGCATTCGATGCTTAATGTTCGAGACCATAATAGAAGGACTGATGCAAATTCTATTAGTAATGTGCTGCATAGAGAGGAACCAACCTTATGCGGATCTTCCGTTGCAAACACGGATACTCATGGGAACAAGCTATCAGAACACAATGCGCCAAATTGGTTGCATTGCTATCCTGTTCCTCCATGGGTATTGCCGATGAATCCTGGTTGGACTAATGCCACTTCCATGGCAGCAGTTCATCCGACTTCGGTATCCATGTGCAACCCTTATAGCGCTGCGCCAACTTCAATGCAATGGTGTCCCACGCCTATGTTTGCGATTCCTGGAATTAGGCCACAAGACATACCTTTGCAACTTGTATCAGCCTCACACTGGAATGGTCCATCACTCTGCCTCTCGCCGCCTTCCTCCACAAGTAACAGCTGCTCGGGTAATGGCTCGCCAACACTAGGCAAACACACTAGAGATACAGTTTCCGCAGATGAAGACAAATCAGACAAGTGTATTCCGGTTAGAAAAACGACCAAAATTGAAGTCGCAAATGAGGTTCCGAAAAGTCCTAATGGAGAAGGCAAAAACATTGTGTTGGGTGCATCTCAGATTTTGGAAGCCTAA 1251 0.4516 MNMSETETEKNPGIKLFGWKIPLPECRIPINSPPMDTCSTTKKTLEEKLSVEKTEQRDDSSNSMDSKQESRSNTQEKEPIVNSEQAEDNMESGDTDQDKILKKPDKIVQCPRCRSWDTKFCYFNNYNVNQPRHFCKNCQRYWTAGGTMRNVPIGAGRRKNKHLASQYRQVIVNSDGIPISRQETTSLSGHQRAMTDNETVLKFGPDTPLCESMHSMLNVRDHNRRTDANSISNVLHREEPTLCGSSVANTDTHGNKLSEHNAPNWLHCYPVPPWVLPMNPGWTNATSMAAVHPTSVSMCNPYSAAPTSMQWCPTPMFAIPGIRPQDIPLQLVSASHWNGPSLCLSPPSSTSNSCSGNGSPTLGKHTRDTVSADEDKSDKCIPVRKTTKIEVANEVPKSPNGEGKNIVLGASQILEA 416
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g02072 416 Pfam Dof domain, zinc finger 105 162 IPR003851 GO:0003677|GO:0006355
Vifa5g02072 416 MobiDBLite consensus disorder prediction 26 98 - -
Vifa5g02072 416 MobiDBLite consensus disorder prediction 348 366 - -
Vifa5g02072 416 PANTHER CYCLIC DOF FACTOR 2 9 399 IPR045174 GO:0003700|GO:0006355
Vifa5g02072 416 ProSiteProfiles Zinc finger Dof-type profile. 108 162 IPR003851 GO:0003677|GO:0006355
Vifa5g02072 416 MobiDBLite consensus disorder prediction 348 378 - -
Vifa5g02072 416 MobiDBLite consensus disorder prediction 41 74 - -
Vifa5g02072 416 ProSitePatterns Zinc finger Dof-type signature. 110 146 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g02072 Vifa-Chr5 686291417 686293150 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g02072 11 398 C2C2-Dof Transcription Factor Family AT5G39660 32.584 3.83e-48 168
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Vifa5g02072 zf-Dof 3.5e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g02072 - - cam:101500722 583.563