Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g02068 ATGTGCGACACTAATCATGATTCAAACAAGGGAAAGGAAAAAGCAAATGAAGAATCAGTAACCAATCCGAGGATGGAGGAGAATCAGAACAACGAGAACAAGCGAAAAGTTAGGGCATCGGAAGAAGAACCGGATGTCGAATTTAAGAATAATTTTGGTGAAGAAGATTCTCCATTTCTTCTTTTTGGATTCATTATTGATCCAACTAAGGGAAATCAAAAAGCTTACTCGTGCAACTTTTGTAGCAAAAAATTTGTTACTCCACAAGCATTAGGTGGACACCAACATTGCCATAAATCGGAGAGAAAACTCAAAAAAAATAATGAAACTATGAACAAAGCTTGGGAAATTTTCTCTAATGGTAATGTGGGGCCTGGATATCAATATTATGAATTTGACATATTGAACCAGCATGTTGTAGGGTCACCAAGTTTTGATGCACATGATTTGCATGGTTCTACATTGCAGCATATTCCAGAGATAAATCAAGACACTGTGAGTCGACAAGTTCCAATGACAGAGATTGAATTTGGTTTGGTTTCAGAGGGAGGTGCTGATAGTAATGTTGACCTTGAATACAAAGTGACTCAAGAGAAGGAAGCATCCAAAAATACTGATTTGAATCTTAAGCTTTGA 636 0.3695 MCDTNHDSNKGKEKANEESVTNPRMEENQNNENKRKVRASEEEPDVEFKNNFGEEDSPFLLFGFIIDPTKGNQKAYSCNFCSKKFVTPQALGGHQHCHKSERKLKKNNETMNKAWEIFSNGNVGPGYQYYEFDILNQHVVGSPSFDAHDLHGSTLQHIPEINQDTVSRQVPMTEIEFGLVSEGGADSNVDLEYKVTQEKEASKNTDLNLKL 211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g02068 211 PANTHER ZINC FINGER PROTEIN JAGGED 15 152 IPR045320 GO:0003700
Vifa5g02068 211 MobiDBLite consensus disorder prediction 1 21 - -
Vifa5g02068 211 ProSiteProfiles Zinc finger C2H2 type domain profile. 76 103 IPR013087 -
Vifa5g02068 211 SUPERFAMILY beta-beta-alpha zinc fingers 72 103 IPR036236 -
Vifa5g02068 211 MobiDBLite consensus disorder prediction 28 50 - -
Vifa5g02068 211 ProSitePatterns Zinc finger C2H2 type domain signature. 78 98 IPR013087 -
Vifa5g02068 211 Gene3D Classic Zinc Finger 60 121 - -
Vifa5g02068 211 MobiDBLite consensus disorder prediction 1 50 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g02068 Vifa-Chr5 685230307 685230942 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g02068 69 118 C2H2 Transcription Factor Family AT5G25160 46.000 1.19e-09 54.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g02068 - - psat:127129112 262.692