Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g02067 ATGTGCAACGCTAATCATGATCCAAACAAGGGGAAGGAAAAACTGAATGAGGAAACAGTAGCCAAACAGAATAATGAGAACAAGAGAAAGGTGACTGTGTTGGAAGAAAAACCTGTTGCTAAATCCAAGAGTTCAAAGTGTCACAAGAATGATACTGGTGAAGAAGAATCAACAAATTCATCCAAAGAAATTTCTCCATTTGTTCTTTTTGGATATATTATTGATCCAACTAAAGGAAATCGAAAAGCTTACCCGTGCAACTTTTGCACCCAAAAATTTGTTTCTCCACAAGCATTAGGTGGACACCAAAATTGTCACAAGTTGGAGAGAAGACTCCAGAAAAAGAACGAAACTATGAACAAAGTTAGGGAAATTTTCTCTAATATGGGGCATGGATGTCAAAATTCTGGAATTGACAGAGAGATTTTGCATGCTACAGAGTCATCAAGTTTTGATGCATGGATTTTGCACTATGTTCAGCATATAAACCAAAACATTGTTAATGAACAAGTTACTATGACTGAAATTGACTTTGGATTGGTTTCAGAGGCAGGTGCTAATATAGATGTTGGACATGAACACAAAGAGACTCAGGAGGAGGAGGAGGAAGCATGCAAAACGATTGATTTGAACCTTAAGCTTTGA 645 0.3705 MCNANHDPNKGKEKLNEETVAKQNNENKRKVTVLEEKPVAKSKSSKCHKNDTGEEESTNSSKEISPFVLFGYIIDPTKGNRKAYPCNFCTQKFVSPQALGGHQNCHKLERRLQKKNETMNKVREIFSNMGHGCQNSGIDREILHATESSSFDAWILHYVQHINQNIVNEQVTMTEIDFGLVSEAGANIDVGHEHKETQEEEEEACKTIDLNLKL 214
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g02067 214 ProSitePatterns Zinc finger C2H2 type domain signature. 86 106 IPR013087 -
Vifa5g02067 214 Coils Coil 105 125 - -
Vifa5g02067 214 Gene3D Classic Zinc Finger 58 134 - -
Vifa5g02067 214 MobiDBLite consensus disorder prediction 7 58 - -
Vifa5g02067 214 ProSiteProfiles Zinc finger C2H2 type domain profile. 84 111 IPR013087 -
Vifa5g02067 214 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 11 129 IPR044246 GO:0009788
Vifa5g02067 214 SUPERFAMILY beta-beta-alpha zinc fingers 80 112 IPR036236 -
Vifa5g02067 214 Coils Coil 211 214 - -
Vifa5g02067 214 MobiDBLite consensus disorder prediction 1 60 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g02067 Vifa-Chr5 684733637 684734281 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g02067 82 126 C2H2 Transcription Factor Family AT5G57520 55.556 5.54e-10 54.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g02067 - - psat:127129112 303.523