Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g02051 ATGGCTTCTGTGTTTCTTGTGTTGGTAACTTTTTTACTTTCTATGAACTATTCACAGCAACTTCAATCTTCAAACTCTCAAACCCTTTTAAGAATTCAACAGCTTTTGAACTTTCCTTCATCTTTAAGAAGTTGGAAAAACTCCACAGATTTTTGCAACACAGATTCAAACTCTTCACTCACTGTTGTATGCTATGAAAATAGCATAACTCAGCTTCATATAATAGGTGAGGGAAAAACTCGAACTCTGTCGAAAAATTTCTCAGTTGATTCATTTGTTACAACACTGGTGAAGCTTCAAGGTTTGAAAGTCCTCACATTGGTTTCTCTTGGTATATGGGGTCCGTTACCGGGTAAAATCGCTCATTTATCGTCGTTGGAAATATTTAATGTGAGTTCGAATCATTTTTACGGTTCGATCCCTGTCGAACTTTCATCGCTTTCGAATCTTCAAACACTCATTCTTGATGACAATATGTTTTCTGGTGTGCTTCCTATTTGGATTGATTTGCTTTCGGGCTTAACTGTGTTGAGTTTGAAGAACAATTTGTTCAATGGAACGTTGCCGAATTCGGTTAGTAACTTGGATAATTTGAGAATTCTTTCGCTTTCTCGTAATAAATTTTACGGTGTAGTACCTGATTTGAGTCACTTGAGAAATCTTCAAGTACTTGAGTTGGATGATAATGCTTTTGGACCTCAATTTCCTAAGCTTGGTCATAAATTGGTTAGTATAGTGCTAAGAGTTAACATGTTCAGGTCTGGTATACCTGCTGATGTGAGCTCGTATTATCAGCTCAAGCGATTTGATATATCGTCGAATACATTTGTCGGGCCATTCCAAACTGCATTGTTGTCACTTCCTTCTATTGCTTACATTAACATCTCTCAGAACAAATTAACAGGAATGCTTTTTGAGAATGTTTCTTGCAACTCTGAGCTTGAAGTTGTTGATTTATCGTTGAATCTCTTGACTGGGAGCTTACCTAAATGTTTAGTTTCAAATTCTAGTGATAGGACCGTTTCGTATGCTAGAAATTGTCTTGAGACAACGAATCAAAATCAGCAGCCACTGCCATTTTGCCACACCGAAGCCTTAGCTGTGGGAGTATTACCTGAAAGAAAGAAGCAGAAGCAAGTATCAAAGGTAGTACTTACCCTTGGTATAGTAGGTGGAACTCTTGGAGGAGTAGCAGTTTTTTTGCTGATTTTGTTTATTGTTAGAAGAGGAATTTCTAGAAGGAAAACGAAGAAGAATCCTCCGACAAGATTTATATCGGAGAATGCAGCTTCCGGATACACCTCTAAGTTGCTTTCTGATGCAAGATATATATCTCAAACAAAGAAATTTGGAGCACTTGGCCTGCCAAACTATAAGAGTTTTTCATTGGAAGAGATAGAGGCAGCTACAAACAACTTTGACACAGCTTCTTTCATGGGTGAAGATTCTTATGGAGAGATGTACAAAGGTCAGCTGAAGAATGGATCATGTGTTGTTATTAGATGTATCAAAATGAAAAAAAGATACAGCACTCAGAACTTCATGCAGCACATGGAACTTATCTCGAAACTTAGGCATCGTCATTTGGTTAGCGCTCTCGGACACTGCTTTGAATGTTCTTTAGAAGATTCGAGTGTTAGCAGAATATTTCTCGTCTTTGAATATGTACCAAATGGCACACTCAGGAGCTGGACATCTGACGGGCACACCGGAAAATCTTTGAATTGGACGCAGCGCATAGGAGCCGCAATTGGAATAGCAAAGGGAATCCAATTTCTGCACACAGGAATTGTCCCTGGTGTATATTCAAACAATCTCAAAATCGAGGATGTTTTATTGGATCACAATCTTGTTGCAAAAATCAGAAGTTATAACTTGCCTTTGTTATCTAACATAGGAAAGGCTCGACGAGGAAATTCTTCCAATGGATTCAAACATTCTGGTATCAGTAAAAGTGGAAAGCATGAAGATAAGTGTGACATATATGACTTAGGAGTAATACTTCTAGAAGTCATTCTAGGAAGGACAATAAAGACAACAAATGATGCAGAAGCTTTTAAGGATCTGTTGCAAGCAAGCTTAGGAGCAGATGAGGATGCTCGAAGGAGCATTGTTGATCCAGCAATTCGCAAGGCATGCTTGGAACAATCATTGAAGACAATGATGGAGATATGTGTGAGGTGTCTTATTAAAGAACCTGCAGAAAGACCCTCCATAGAAGATGTTTTGTGGAATTTGCAGTTTGCTGCTCAAGTACAGGATGCTTGGAGAGGGGATTCTCAAAGTAGTGAGGGGTCACCAGGTTCTCCTCAAAGAACGGCCTTCCGTTAG 2331 0.3887 MASVFLVLVTFLLSMNYSQQLQSSNSQTLLRIQQLLNFPSSLRSWKNSTDFCNTDSNSSLTVVCYENSITQLHIIGEGKTRTLSKNFSVDSFVTTLVKLQGLKVLTLVSLGIWGPLPGKIAHLSSLEIFNVSSNHFYGSIPVELSSLSNLQTLILDDNMFSGVLPIWIDLLSGLTVLSLKNNLFNGTLPNSVSNLDNLRILSLSRNKFYGVVPDLSHLRNLQVLELDDNAFGPQFPKLGHKLVSIVLRVNMFRSGIPADVSSYYQLKRFDISSNTFVGPFQTALLSLPSIAYINISQNKLTGMLFENVSCNSELEVVDLSLNLLTGSLPKCLVSNSSDRTVSYARNCLETTNQNQQPLPFCHTEALAVGVLPERKKQKQVSKVVLTLGIVGGTLGGVAVFLLILFIVRRGISRRKTKKNPPTRFISENAASGYTSKLLSDARYISQTKKFGALGLPNYKSFSLEEIEAATNNFDTASFMGEDSYGEMYKGQLKNGSCVVIRCIKMKKRYSTQNFMQHMELISKLRHRHLVSALGHCFECSLEDSSVSRIFLVFEYVPNGTLRSWTSDGHTGKSLNWTQRIGAAIGIAKGIQFLHTGIVPGVYSNNLKIEDVLLDHNLVAKIRSYNLPLLSNIGKARRGNSSNGFKHSGISKSGKHEDKCDIYDLGVILLEVILGRTIKTTNDAEAFKDLLQASLGADEDARRSIVDPAIRKACLEQSLKTMMEICVRCLIKEPAERPSIEDVLWNLQFAAQVQDAWRGDSQSSEGSPGSPQRTAFR 776
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g02051 776 Pfam Protein tyrosine and serine/threonine kinase 478 743 IPR001245 GO:0004672|GO:0006468
Vifa5g02051 776 MobiDBLite consensus disorder prediction 757 776 - -
Vifa5g02051 776 ProSiteProfiles Protein kinase domain profile. 473 748 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa5g02051 776 FunFam Putative inactive leucine-rich repeat receptor-like protein kinase 446 555 - -
Vifa5g02051 776 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 71 746 - -
Vifa5g02051 776 Gene3D Ribonuclease Inhibitor 242 366 IPR032675 -
Vifa5g02051 776 SUPERFAMILY Protein kinase-like (PK-like) 456 748 IPR011009 -
Vifa5g02051 776 Gene3D Transferase(Phosphotransferase) domain 1 556 763 - -
Vifa5g02051 776 Pfam Leucine rich repeat 148 208 IPR001611 GO:0005515
Vifa5g02051 776 FunFam Putative inactive leucine-rich repeat receptor-like protein kinase 556 762 - -
Vifa5g02051 776 Gene3D Ribonuclease Inhibitor 22 241 IPR032675 -
Vifa5g02051 776 FunFam Putative inactive leucine-rich repeat receptor-like protein kinase 22 240 - -
Vifa5g02051 776 SUPERFAMILY L domain-like 58 349 - -
Vifa5g02051 776 Gene3D Phosphorylase Kinase; domain 1 436 555 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g02051 Vifa-Chr5 679761222 679764092 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g02051 38 767 Miscellaneous Gene Families AT3G03770 62.041 0.0 884
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VI-1 Vifa5g02051 PK_Tyr_Ser-Thr 1.1e-18 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g02051 - - gmx:100786077 1188.33