Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g02013 ATGGTTAGCATCGACCGTTCATACACAGTGACACCTTCTGAAACAACACCAACCACCACACTCTCTCTTTCCCTCTGCGATCAAATCAAGCTCTCAAATCATGCATCCCAGCTTTATCTCTTTACCAAAACCAAACTTCATCCTTCAACAAACATTCTCATTACCAGTCTCTCCAAAACACTCAACCACTACTATCCCTTCGCAGGTCGATTAAACTTGGTCAAAGGAACAAACCACTTCCAACTTCATTGCAACAACAAGGGTGCACACTTCTTTGAGGCCACGTGTCATCTCACTTTAAACCATTTATTTGCTAATAATTTCGATTCCAACCATGTTGTCCAAAAACTACTCCCAAAAGTTAACTATGATGTTCCAATTCAACATGTTCCTTTGTTGGTTGTTCAACTCACCAAGTTCCCTTGTGGCTCTCTCACCCTTGGTCTTGCTCTTTGTCGTCCTATTCTCGATGGTTTCTCGTCTGTTAATTTCGTTACCTCATGGGCAAATCTTGCTAAAGGAAAGAATTTAGATTCTAGTTTGATCCCTTTTATAAATCCATCTCACTTAGATTCCAAAAGCCTTCATTTACCACCACGTTTTCAACATCATGAGTTTTCTCCACCACCCCTTTGGGAAGGGTGTAATAGTAATAACTTGTTACCACTATATGCAACAACCACGTTAAAGCTGACAAAAAACCAAGTTAACAAACTCAAGAACAAGGTACGAGGTTATACTAGTTTTGAGATTATTAGTGGTTACTTATGGAGATGTGTTTGCAAAGTGCGTTTTCAAGGAAATTGGAACCAACCAACAAGGTTAACAACTTCAGTTAATTGTAGAAACAGGTTGAATCCACCTCTTCCTAAGAAATACTTTGGGAATGCAACATTTCCAACAGTGACACAAGTTTGTTCATTTGATGATATTGTTCACAAGCCTTTATGTTACGTGGTTGGGAAAGTGAGGGAAGCTATTGAGAAGGTGAATGATGAGTATGTAAGATCTGCTCTTGACTATGTTGGAAATCAGAAAGATATGAGTTTGTTAAGGGACAAGTTTTACAAGTTTGATAGAAGAAATGTACTAATGGGTGGTGACCCGAATTTGTATGTTGTTGGTTGGAGTAATTTTCCGTTTTATGAGACTGATTTTGGGTGGGGGAAACCTGATTGTTTGGTTCCTGGGTTTGTTAACTCTGATGGTATTGGTAAGGCTTTTGTTCTTGATGATGCAAATGGTGATGGTTTTGTTGTGACTACTTGTTTGCAACCTTCTCATATAGATGCTTTGAAGAAGTTGTTTTATGAGGATTTGGAGATGATCTCTAGTTCCAAACTATGA 1347 0.3868 MVSIDRSYTVTPSETTPTTTLSLSLCDQIKLSNHASQLYLFTKTKLHPSTNILITSLSKTLNHYYPFAGRLNLVKGTNHFQLHCNNKGAHFFEATCHLTLNHLFANNFDSNHVVQKLLPKVNYDVPIQHVPLLVVQLTKFPCGSLTLGLALCRPILDGFSSVNFVTSWANLAKGKNLDSSLIPFINPSHLDSKSLHLPPRFQHHEFSPPPLWEGCNSNNLLPLYATTTLKLTKNQVNKLKNKVRGYTSFEIISGYLWRCVCKVRFQGNWNQPTRLTTSVNCRNRLNPPLPKKYFGNATFPTVTQVCSFDDIVHKPLCYVVGKVREAIEKVNDEYVRSALDYVGNQKDMSLLRDKFYKFDRRNVLMGGDPNLYVVGWSNFPFYETDFGWGKPDCLVPGFVNSDGIGKAFVLDDANGDGFVVTTCLQPSHIDALKKLFYEDLEMISSSKL 448
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g02013 448 Gene3D - 1 208 IPR023213 -
Vifa5g02013 448 PANTHER TRICHOTHECENE 3-O-ACETYLTRANSFERASE 10 429 - -
Vifa5g02013 448 Gene3D - 217 439 IPR023213 -
Vifa5g02013 448 Pfam Transferase family 1 437 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g02013 Vifa-Chr5 670785784 670787130 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g02013 2 438 Monolignol Biosynthesis Gene Families AT5G48930 31.778 2.02e-68 222
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g02013 K13065 - gmx:100819383 494.197