Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g02006 ATGGAGATTCATTTTCAGCAACCAAACATGCAACAAAATCAGAAAACAATTTCAGTGAACAAAGGAGGAAAGTTCAAAGGTAGAAACAGAAACAGCAATAACACAAACAAATTTGTTGGTGTGAGACAAAGACCATCAGGTAGATGGGTTGCTGAGATCAAAGACACAACTCAGAAGATAAGAATGTGGCTTGGAACATTTGAGACAGCTGAGGAAGCAGCTCGAGCTTACGATGAAGCCGCGTGTCTTCTTCGAGGTTCGAACACTCGAACCAACTTCATCACTCATGTCTCATTGGATTCTCCTCTTGCTTCTAGGATAAGAAATCTTCTTAACAACAGAAAAGGCGAGAAAAAACAGGAAGATAGCGCTGTTGCTTCTGCTCCAAGTAACATCAACACTACTAGTAACACTAGTAATACCGATACAAATACAATTACAAGCAATGATGATAACAAGGAGAATTCTCTTTCGAGTGAGGCTACTCCGAATAAAGAACTTTTTGAGGATGGTTATAAACCAGATTTGAGCAATTGCAAGGTGGATTTTGAGTCAGGTTCACAATCCAATTTTTCATGGGGATTTGGACCTGTTTTTGATCATTTTCCATTTGCTCAATTCTTGGATATTACGAAGAACAACGATGGAATGATCGATGCGTCTAGCTTGGAGCTTTCGGAATTTGAAAGAATGAAAGTTGAAAGACAGATATCAGCTTCACTTTATGCTATTAATGGAGTGCATGAGTACATGGAAGCTGTTCATGACTCCAATGAAACTTTATGGGATCTTCCACCTTTGTGCCCATTATTCTGTTGA 819 0.3907 MEIHFQQPNMQQNQKTISVNKGGKFKGRNRNSNNTNKFVGVRQRPSGRWVAEIKDTTQKIRMWLGTFETAEEAARAYDEAACLLRGSNTRTNFITHVSLDSPLASRIRNLLNNRKGEKKQEDSAVASAPSNINTTSNTSNTDTNTITSNDDNKENSLSSEATPNKELFEDGYKPDLSNCKVDFESGSQSNFSWGFGPVFDHFPFAQFLDITKNNDGMIDASSLELSEFERMKVERQISASLYAINGVHEYMEAVHDSNETLWDLPPLCPLFC 272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g02006 272 MobiDBLite consensus disorder prediction 20 43 - -
Vifa5g02006 272 Gene3D AP2/ERF domain 36 95 IPR036955 GO:0003700|GO:0006355
Vifa5g02006 272 MobiDBLite consensus disorder prediction 114 170 - -
Vifa5g02006 272 Pfam AP2 domain 37 86 IPR001471 GO:0003700|GO:0006355
Vifa5g02006 272 PRINTS Ethylene responsive element binding protein signature 60 76 IPR001471 GO:0003700|GO:0006355
Vifa5g02006 272 PRINTS Ethylene responsive element binding protein signature 38 49 IPR001471 GO:0003700|GO:0006355
Vifa5g02006 272 SMART rav1_2 37 100 IPR001471 GO:0003700|GO:0006355
Vifa5g02006 272 CDD AP2 37 93 IPR001471 GO:0003700|GO:0006355
Vifa5g02006 272 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 24 238 - -
Vifa5g02006 272 SUPERFAMILY DNA-binding domain 37 94 IPR016177 GO:0003677
Vifa5g02006 272 MobiDBLite consensus disorder prediction 124 163 - -
Vifa5g02006 272 MobiDBLite consensus disorder prediction 20 41 - -
Vifa5g02006 272 ProSiteProfiles AP2/ERF domain profile. 37 94 IPR001471 GO:0003700|GO:0006355
Vifa5g02006 272 FunFam ethylene-responsive transcription factor RAP2-11 36 95 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g02006 Vifa-Chr5 669391421 669392239 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g02006 24 272 AP2-EREBP Transcription Factor Family AT5G19790 44.961 3.53e-56 179
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vifa5g02006 AP2 6e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g02006 K09286 - gmx:100796898 386.341