Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g01996 ATGCCAGAGTTGAGAAGTGGAGCTAGAAGGTCAAAGCGACTTGGAGATCTTCAGCCTGGTCCTGTACCTGTTGATCAAGGAGAAAATTGGGCACATCCTGAACAGAACAGAGCTAGGAGGAGAGTTGGAGGTGGAAGAGGAAGAGGTGGTAATGCTACAGGTTTAGGGAAAGGGTCTTCACCAGCTGTTCCCACAAGGCGACCTGCAGCTGGTAGAGGCCGCGGAGCAAGATTGATTGATTTGGATCCTGAACCTTGTGAGGTCCTTCCAGAACCCATTGCATTTAGGGCTCAGGAACCTGTTTACAATCACTTAGAGGTAGTGGCTAATAATAACATTGTAATGGAGGGTGGAAGTGGTGATAAAGTGGCAGCAGCTGAAGAAGAGGCAACCACAACCCCTGTCCCTGAGAGGGTGCAAGTTGGTAACTCTCCTGTATATAAGACAGAGAGGAAGTTGGGTAAGGGTGGTTTTGGCCAAGTGTATGTTGGCAGAAGGGTTAGTGGGGGCTCTGATCGAACAGGTCCTGATGCTATCGAGGTGGCACTCAAGTTTGAGCATAGAAACAGTAAAGGCTGTAATTATGGGCCTCCTTATGAGTGGCAAGTTTACAGTACTCTGAATGGTTGTTATGGCGTTCCCTGGGTTCATTACAAGGGTCGACAAGGAGATTTCTACATTTTGGTGATGGACATACTTGGGCCAAGCCTTTGGGATGTCTGGAATTCTCTTGGTCAATCGATGTCACCAAGTATGGCTGCTTGTATTGCAGTTGAGGCTATATCAATTCTTGAGAAGCTCCATATGAAAGGGTTTGTGCATGGAGATGTAAAACCAGAAAACTTTTTGCTTGGTCAACCTGGAACGGCTGATGATAAGAAGTTGTATCTTATTGATCTTGGTTTAGCTTCAAAGTGGAAGGATGCATCATCTGGTCAACACGTTGAATATGACCAGAGACCTGATATATTCAGGGGGACGATAAGGTATGCTAGTGTGCATGCACATTTAGGTAGGACTGGCAGTCGAAGGGATGATCTTGAGTCACTAGCATACACGTTAATATTTCTCATAAAAGGGAGATTGCCGTGGCAGGGTTATCAGGGTGACAATAAAAGTTTTCTTGTTTGTAAGAAAAAAATGTCCACTTCTGCGGAGTTGATGTGCTGCTTTTGTCCCGCTCCATTTAAGCTGTTCCTGGAAGCAGTTACAAACATGAAATTTGACGAGGAGCCAAATTATTCCAAGCTCATATCACTCTTTGACAGCTTGATCGAACCATGCACTCCATTGAGACCTATTAGAATTGATGGAGCTTTAAAGGTTGGTCAAAAGCGAGGAAGGATGCTTATAAATCTGGAGGAAGATGAGCAGCCTAAGAAAAAAGTGCGATTGGGGAGTCCCGCTACTCAGTGGATATCAGTGTATAATGCACGCCGTCCCATGAAGCAAAGATATCATTATAACGTAGCGGACAATAGGCTCGGGCAGCATGTAGACAAGGGTATTGAGGATGGGTTGTATATAAGCTGTGTGGCCTCTTCAGCAAATTTGTGGGCTCTAATCATGGACGCAGGAACAGGTTTTTCTTCCCAGGTTTACGAGTTATCACCTGTCTTCCTGCACAAGGATTGGATTATGGAGCAATGGGAAAAAAATTACTATATCAGTTCAATAGCTGGTGCAGTTAATGGCAGTTCCTTGGTTGTCATGTCCAAAGGAACTCCTTATACACAGCAGTCCTACAAAGTGAGTGATTCTTTTCCTTTCAAATGGATAAACAAGAAGTGGAAAGAAGGATTCCATGTTACCTCCATGACTACTGCTGGCAGCCGCTGGGGTGTTGTAATGTCCAGAAACGCAGGGTATTCTGATCAGGTTGTGGAGCTTGACTTTTTGTATCCAAGTGAAGGAATTCATCGACGATGGGAAAATAATTACCGGATTACTTCTATGGCTGCTACTAGTGATCAGGCAGCCTTCATACTGAGCATACCAAAACGTAAATTACTTGATGAAACTCAAGAGACTCTGAGAACATCTGCTTTTCCTAGCACCCATGTAAAGGAAAAGTGGGCCAAAAATCTCTATATTGCCTCGATATGTTATGGGCGAACTGTTTGCTAG 2127 0.4452 MPELRSGARRSKRLGDLQPGPVPVDQGENWAHPEQNRARRRVGGGRGRGGNATGLGKGSSPAVPTRRPAAGRGRGARLIDLDPEPCEVLPEPIAFRAQEPVYNHLEVVANNNIVMEGGSGDKVAAAEEEATTTPVPERVQVGNSPVYKTERKLGKGGFGQVYVGRRVSGGSDRTGPDAIEVALKFEHRNSKGCNYGPPYEWQVYSTLNGCYGVPWVHYKGRQGDFYILVMDILGPSLWDVWNSLGQSMSPSMAACIAVEAISILEKLHMKGFVHGDVKPENFLLGQPGTADDKKLYLIDLGLASKWKDASSGQHVEYDQRPDIFRGTIRYASVHAHLGRTGSRRDDLESLAYTLIFLIKGRLPWQGYQGDNKSFLVCKKKMSTSAELMCCFCPAPFKLFLEAVTNMKFDEEPNYSKLISLFDSLIEPCTPLRPIRIDGALKVGQKRGRMLINLEEDEQPKKKVRLGSPATQWISVYNARRPMKQRYHYNVADNRLGQHVDKGIEDGLYISCVASSANLWALIMDAGTGFSSQVYELSPVFLHKDWIMEQWEKNYYISSIAGAVNGSSLVVMSKGTPYTQQSYKVSDSFPFKWINKKWKEGFHVTSMTTAGSRWGVVMSRNAGYSDQVVELDFLYPSEGIHRRWENNYRITSMAATSDQAAFILSIPKRKLLDETQETLRTSAFPSTHVKEKWAKNLYIASICYGRTVC 708
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g01996 708 ProSitePatterns Protein kinases ATP-binding region signature. 153 184 IPR017441 GO:0005524
Vifa5g01996 708 PANTHER CASEIN KINASE-RELATED 140 672 - -
Vifa5g01996 708 SUPERFAMILY Protein kinase-like (PK-like) 147 434 IPR011009 -
Vifa5g01996 708 Gene3D Transferase(Phosphotransferase) domain 1 112 464 - -
Vifa5g01996 708 ProSitePatterns Serine/Threonine protein kinases active-site signature. 272 284 IPR008271 GO:0004672|GO:0006468
Vifa5g01996 708 SMART serkin_6 147 425 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa5g01996 708 Pfam Protein kinase domain 147 382 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa5g01996 708 FunFam Casein kinase 1-like protein 119 467 - -
Vifa5g01996 708 ProSiteProfiles Protein kinase domain profile. 147 425 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa5g01996 708 MobiDBLite consensus disorder prediction 1 77 - -
Vifa5g01996 708 CDD STKc_CK1 147 421 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g01996 Vifa-Chr5 667174421 667180469 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g01996 227 421 MAP Kinase Kinase Kinase AT3G27560 22.727 3.67e-08 54.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CK1_CK1-Pl Vifa5g01996 Pkinase 8.8e-16 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g01996 - - tpra:123890076 1336.63
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa5g01996 5 667174421 667180469 Vifa5g01996 5 667174421 667180469 ECH