Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g01991 ATGGCAATTGCACGCACTGGAGTCTACGTCGACGACTATTTGGAGTACGCTAATACATTGCCCGCTGAGCTTCAGAGACTACTTAACACCGTCCGTGAACTCGATGAACGATCCCAATCTATGATAAACCAGACTAGGCAGCAGACAAAGTACTGTATGGGGTTCTCGTCTCATGGCTCTAAGAAGGGTAGTCATAATAATAATCATAATTATAGTTATAATAATAATTATGCTAACGGCGACGATGATGCTTCTATCGAGAAACTGCTAAAAGAAATTGAGGCAAACCAGGATAGTGCTTTGAGTCTATGCACTGAGAAGGTTTTGCTGGCGCAGCAAGCTTATGAACTGATAGATAGCCATGTAAAACGACTTGATGAGGATTTAAACAACTTCGCTGAAGATTTAAAGCAAGAGGGGAAAATATCACCAGATGAACCAGCCATTCTCCCCCCACTGCCTATTGTCCCTAAACCGGAAAAGCGCAGGCACGTGTATGGTACACCTCAATCAAAGAGACTTGATTACAGGGAAAGAGACTGGGATCGGGACTTTGAGCTGATGCCGCCACCAGGAGGCCATAAGAAGGATTATGCGGCCCCTATGGATATTGATCAACCCATTGATCCAAATGAACCTACATACTGTGTTTGTCATCAGGTATCTTTTGGAGACATGATTGCTTGTGACAATGAAAATTGCCGAGGAGGTGAGTGGTTCCACTATTCATGTGTTGGCCTAACCCAAGAAACAAGGTTCAAGGGAAAGTGGTATTGTCCAACTTGCAGATTACAACCACACTGTTAA 807 0.4374 MAIARTGVYVDDYLEYANTLPAELQRLLNTVRELDERSQSMINQTRQQTKYCMGFSSHGSKKGSHNNNHNYSYNNNYANGDDDASIEKLLKEIEANQDSALSLCTEKVLLAQQAYELIDSHVKRLDEDLNNFAEDLKQEGKISPDEPAILPPLPIVPKPEKRRHVYGTPQSKRLDYRERDWDRDFELMPPPGGHKKDYAAPMDIDQPIDPNEPTYCVCHQVSFGDMIACDNENCRGGEWFHYSCVGLTQETRFKGKWYCPTCRLQPHC 268
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g01991 268 CDD ING_plant 19 129 - -
Vifa5g01991 268 Pfam Inhibitor of growth proteins N-terminal histone-binding 9 132 IPR024610 -
Vifa5g01991 268 ProSiteProfiles Zinc finger PHD-type profile. 213 265 IPR019787 -
Vifa5g01991 268 Coils Coil 24 44 - -
Vifa5g01991 268 CDD PHD_ING 215 262 - -
Vifa5g01991 268 PANTHER INHIBITOR OF GROWTH PROTEIN 2 263 IPR028651 -
Vifa5g01991 268 SMART ING_2 9 132 IPR024610 -
Vifa5g01991 268 SUPERFAMILY FYVE/PHD zinc finger 195 264 IPR011011 -
Vifa5g01991 268 Pfam PHD-finger 215 263 IPR019787 -
Vifa5g01991 268 Gene3D - 5 130 - -
Vifa5g01991 268 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 207 265 IPR013083 -
Vifa5g01991 268 SMART PHD_3 215 263 IPR001965 -
Vifa5g01991 268 FunFam PHD finger protein ING 207 265 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g01991 Vifa-Chr5 665367066 665369005 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Vifa5g01991 ING 2e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g01991 - - lang:109339676 468.388
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa5g01991 5 665367066 665369005 Vifa5g01991 5 665367066 665369005 ECH