Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g01989 ATGAAAATGGATGTTTGCCAAAACGTAACACTTTCTGGTGACTGCAAACAAGAGAAGCTCATGAACCCTTCAAGTAGTCTTGATGACCTTTTTTCAGCTCAAAACATGGAAGTGAATGTTGAAATGGAGTGGCTTTCGGTGTTTGTTGAAGATTGTTTCTCAAGCCCACAAAGCTGTGTTTTGTTACCCTCTAGTGTTCAAAACACAACAAGTACAAACATCTCAACAAACCCTTCAAACACAATGAACAAACCAAAGCAACAAAATGAGTCACCTTTTGCAGTACCAGGGAAAGCAAGAAGCAAAAGGAAGAGACTTTCAGCTCCAAGAAGAACAAAAGACCCTTTAAGCATTTTATCAAACACCTTAAACCCACAAAATGAGTCACTATGTTATGACCCTCCTCTCCTAAAACAAACCTATTGGTTAGCTGACAGTGAACTCATTGAACCCAAAGTTGATATCAACACTGAGGTTGCTGAAAAGGAAATTGTGAAAAAGGAAAGGTTTGATTTTGAGGGTTTTGAGAATGATGTCAACAATGGACAAAATCAAGTTCTTCCAACAAGAAGATGCACTCATTGTTTGTCACAGAGGACTCCACAATGGAGAGCTGGACCACTAGGACCAAAGACATTGTGCAATGCTTGTGGTGTGAGGTACAAATCTGGAAGGTTGTTGCCAGAGTATAGGCCTGCTAAGAGTCCAACTTTTGTGAGCTATTTGCATTCCAATTCACATAAGAAAGTCATGGAGATGAGGATGAATGTTGTGTCTTCTATTCCTAGTGAGTAG 795 0.3975 MKMDVCQNVTLSGDCKQEKLMNPSSSLDDLFSAQNMEVNVEMEWLSVFVEDCFSSPQSCVLLPSSVQNTTSTNISTNPSNTMNKPKQQNESPFAVPGKARSKRKRLSAPRRTKDPLSILSNTLNPQNESLCYDPPLLKQTYWLADSELIEPKVDINTEVAEKEIVKKERFDFEGFENDVNNGQNQVLPTRRCTHCLSQRTPQWRAGPLGPKTLCNACGVRYKSGRLLPEYRPAKSPTFVSYLHSNSHKKVMEMRMNVVSSIPSE 264
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g01989 264 Gene3D - 183 254 IPR013088 GO:0006355|GO:0008270
Vifa5g01989 264 ProSitePatterns GATA-type zinc finger domain. 192 217 IPR000679 GO:0006355|GO:0043565
Vifa5g01989 264 PANTHER GATA TRANSCRIPTION FACTOR 14 258 - -
Vifa5g01989 264 SMART GATA_3 186 240 IPR000679 GO:0006355|GO:0043565
Vifa5g01989 264 MobiDBLite consensus disorder prediction 67 90 - -
Vifa5g01989 264 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 189 250 - -
Vifa5g01989 264 ProSiteProfiles GATA-type zinc finger domain profile. 186 222 IPR000679 GO:0006355|GO:0043565
Vifa5g01989 264 CDD ZnF_GATA 191 238 IPR000679 GO:0006355|GO:0043565
Vifa5g01989 264 FunFam GATA transcription factor 181 262 - -
Vifa5g01989 264 MobiDBLite consensus disorder prediction 67 121 - -
Vifa5g01989 264 Pfam GATA zinc finger 192 226 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g01989 Vifa-Chr5 664320028 664321145 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g01989 10 254 C2C2-Gata Transcription Factor Family AT4G32890 40.551 3.01e-44 150
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Vifa5g01989 GATA 1.7e-14 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g01989 - - gmx:100786479 357.836
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa5g01989 5 664320028 664321145 Vifa5g01989 5 664320028 664321145 ECH