Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g01980 ATGGAAGAACCAATAGTTGTTAACAAAGGTGAAGATCAGGTTCTGGATTTGCCTCCAGGTTTCAGATTCCACCCAACAGATGCTGAGATAATAGTCTGTTATCTCACAGAAAAGGTGAAGAACAGCAAATTCAGTGCAACTGCTATAGGTGAAGCTGATTTGAACAAGTGTGAGCCTTGGGATTTACCAAAGAAAGCGAAGATGGGCGAAAAAGAATGGTACTTTTTTTGTCAGAAGGATAGAAAATATCCAACTGGGATGAGAACTAATAGAGCAACGGTATCTGGTTACTGGAAAGCTACTGGTAAGGATAAAGAGATTTTTTACAAAGGAAAGGGTAACCTTGTTGGCATGAAGAAGACTCTTGTGTTCTATAGAGGAAGAGCTCCCAAAGGGGAGAAAACTAATTGGGTTATGCATGAATTCAGATTAGAAGGCAAATTTGCAACTCAAAATCTCCCTAAAGCTGAAAGGGATGAATGGGTTGTGTCAAGGGTTTTCCACAAGAACACAGATGTGAAAAAGCCTCAAATTTCTGGACTTTTAAGGATAAACTCAATTGGTAATGATGATCTTCTAGATTATTCTTCACTTCCACCTCTCATGGATCCTTCATACACAAGTGATGATTTCAAGGGGATTAGTGTTTGTAATCAACAAATTTCATCATCAACTAAATCACAATCTGACGGCTATTATCTTCCAAGCTTCTCCATCAACAATCAACAACAACTAATCAAGCCAGAAGATAATTACCATAGAATAATAAACTATGATCTTCATGAGATGAATCCAACCATGATGAACTACGCTTCCAATTCAAACCAATCGAATCTCAACAACGCAATTGGAAACACACTCTCGCAGTCGCAACCACAACTCCGGCTCCAAAATCCAAACATGAACTACTTCATGTATCAAAATAGGATGATGCAAAGTTCCATTCCCATTCCGACATTCGGAAACAATAATGAGTGCAAAATGGAACAATTCTCTTCAAATCAATCACAAGATACCGGTCTCAGCAACGACACATCATCGGCCGTATCAAAACAAGATATTGGAAGAAATAGGGCATCATTGTATGAAGATCTTGAAGGTCCTTCATCAGTTGCACCTCTCTCAGATTTGGAGGGTTTTTGGGACTATTGA 1152 0.388 MEEPIVVNKGEDQVLDLPPGFRFHPTDAEIIVCYLTEKVKNSKFSATAIGEADLNKCEPWDLPKKAKMGEKEWYFFCQKDRKYPTGMRTNRATVSGYWKATGKDKEIFYKGKGNLVGMKKTLVFYRGRAPKGEKTNWVMHEFRLEGKFATQNLPKAERDEWVVSRVFHKNTDVKKPQISGLLRINSIGNDDLLDYSSLPPLMDPSYTSDDFKGISVCNQQISSSTKSQSDGYYLPSFSINNQQQLIKPEDNYHRIINYDLHEMNPTMMNYASNSNQSNLNNAIGNTLSQSQPQLRLQNPNMNYFMYQNRMMQSSIPIPTFGNNNECKMEQFSSNQSQDTGLSNDTSSAVSKQDIGRNRASLYEDLEGPSSVAPLSDLEGFWDY 383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g01980 383 MobiDBLite consensus disorder prediction 330 352 - -
Vifa5g01980 383 Gene3D NAC domain 26 174 IPR036093 GO:0003677|GO:0006355
Vifa5g01980 383 FunFam NAC domain-containing protein 100-like 26 173 - -
Vifa5g01980 383 ProSiteProfiles NAC domain profile. 17 169 IPR003441 GO:0003677|GO:0006355
Vifa5g01980 383 SUPERFAMILY NAC domain 14 170 IPR036093 GO:0003677|GO:0006355
Vifa5g01980 383 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 16 318 - -
Vifa5g01980 383 Pfam No apical meristem (NAM) protein 18 144 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g01980 Vifa-Chr5 660463697 660465305 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g01980 1 383 NAC Transcription Factor Family AT5G18270 48.744 1.94e-115 337
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vifa5g01980 NAM 9.8e-39 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g01980 - - aprc:113861501 510.375