Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g01978 ATGGTAACCCCACAGTCTAATCTTCCCCCAGGTTTTAGGTTCCACCCAACTGATGCAGAACTCATTCTTCACTATCTTAGAAAAAAAATTGCTTCTATTCCTTTACCTGTTTCCATCATTGCTGAAGTTGATATTTACAAATTAGATCCTTGGGAATTACCAGCCAAGGCTTTGTTTGGTGAGAAAGAATGGTATTTTTTTAGTCCTAGAGATAGAAAGTACCCAAATGGTGCAAGGCCAAACAGGGCAGCTGCTTCAGGGTATTGGAAAGCCACTGGAACTGATAAGACAATAGTTGCATCATTGCCATGTGGAGGAAGGTCACAAGAGAATATTATTGGTGTCAAAAAGGCACTTGTTTTTTACAAAGGAAAACCTCCAAAGGGCATTAAAACTAATTGGATCATGCATGAATATCGCCTTGTTGATAATAATAAACCAATTAAACTCAAAGATTCCTCCATGAGGTTGGACGATTGGGTATTATGCCGAATTTATAATAAATCAAAATGCGCGTTATCATCAACGGAGTCAGAATCAATAATAGGCGAAATAGAACACGTGGACGATGCGTTAATCAAAGAAACTCATTTTCCAATCACAAAGAACACAACACCTCCTCACCAAAACACACTCATGTCACAAAAATCAGTCTCTTTCTCCAACCTATTAGATGCTATGGACTACTCCATGTTAAGCAATTTCTTATCAGAAAACCATTCCAACAATCCATCAGGAATTGGAACAAGTTCAAACTTCAACAACACTGAAAACTTTAACCAACAACAACAATCTTCCCAAATCAACACCAACAACAATTACATGTCACAAAACAAGAATCCTTTAAAGCACCATCTTTCAAACATAGATGAGGACAACAACATGTTATTGTACCCTTCAAAGAAATTCTTGAGCTCCTCTTGCAATTTCTCTAACATCAATACACAATATGAAAGCTACCTCATGAAGCAATCTTTGATGAATCAACAATTGGTTTTAGGTCCTCATCATCAATATCAAGGATAA 1026 0.3694 MVTPQSNLPPGFRFHPTDAELILHYLRKKIASIPLPVSIIAEVDIYKLDPWELPAKALFGEKEWYFFSPRDRKYPNGARPNRAAASGYWKATGTDKTIVASLPCGGRSQENIIGVKKALVFYKGKPPKGIKTNWIMHEYRLVDNNKPIKLKDSSMRLDDWVLCRIYNKSKCALSSTESESIIGEIEHVDDALIKETHFPITKNTTPPHQNTLMSQKSVSFSNLLDAMDYSMLSNFLSENHSNNPSGIGTSSNFNNTENFNQQQQSSQINTNNNYMSQNKNPLKHHLSNIDEDNNMLLYPSKKFLSSSCNFSNINTQYESYLMKQSLMNQQLVLGPHHQYQG 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g01978 341 Gene3D NAC domain 17 172 IPR036093 GO:0003677|GO:0006355
Vifa5g01978 341 MobiDBLite consensus disorder prediction 243 283 - -
Vifa5g01978 341 ProSiteProfiles NAC domain profile. 8 168 IPR003441 GO:0003677|GO:0006355
Vifa5g01978 341 Pfam No apical meristem (NAM) protein 9 141 IPR003441 GO:0003677|GO:0006355
Vifa5g01978 341 FunFam NAC transcription factor 56 17 173 - -
Vifa5g01978 341 PANTHER NAC TRANSCRIPTION FACTOR 56 8 249 - -
Vifa5g01978 341 SUPERFAMILY NAC domain 3 168 IPR036093 GO:0003677|GO:0006355
Vifa5g01978 341 MobiDBLite consensus disorder prediction 243 284 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g01978 Vifa-Chr5 658782626 658783899 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g01978 4 341 NAC Transcription Factor Family AT3G04070 50.997 1.55e-106 313
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vifa5g01978 NAM 1.4e-39 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g01978 - - tpra:123890056 572.778