Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g01977 ATGGAGTTCCTAATTAAACTTATCACTTTTCTACTATTTTCTTTGCCTGCAATCACTTTCTCCCAATCTTTAGGTAACAACAACCTACTCACCAATAGAAAGATTTTTCAAAAACAAGAGGAAATTTCCTCTTACGCTGTTGTATTTGATGCTGGTAGCACTGGTAGTCGTATTCATGTTTACCATTTTAACCAGAACTTAGATCTTCTTCATATTGGCAAAGGTGTTGAGTATTATAATAAGATAACACCTGGTTTGAGTTCATACGCTAATAATCCAGAACAAGCTGCAAAATCTCTCATTCCACTTTTAGAGCAAGCAGAAAATGTTGTCCCTGAGGATCTTCAACCCAAGACACCTGTTAAACTTGGGGCAACAGCAGGCTTAAGGCTTTTGAATGGGGATGCTTCTGCAAAGATATTGCAATCAGTAAGGGATATGCTGAGCAACAGAAGTACCTTCAATGTTCAACCTGATGCAGTTTCTATAATTGATGGAACCCAAGAAGGTTCTTATATGTGGGTGACAGTTAACTATGCATTGGGAAATTTGGGGAAAAAGTACACAAAAACAGTTGGAGTAATAGATCTTGGAGGTGGATCAGTGCAAATGACATATGCAGTGTCAAAGAAAACAGCTAAAAATGCTCCAAAAGTTGCAGATGGTGATGATCCATACATTAAGAAAATTGTACTCAAGGGAATCCCATATGATCTCTATGTTCACAGTTACTTACACTTCGGTAGAGAAGCATCTCGAGCCGAGATTTTGAAGATCACTCCTCGTTCTCCTAACCCTTGCCTTTTAGCCGGATTCGATGCGATCTATACATATTCAGGAGAAGATTTTAAGGCAACTGCTCCCGCATCTGGTGCAAACTTTAATAGATGCAAAAACACAATTCGAAAAGCTCTAAAGTTGAATTATCCATGTCCCTATGAGAATTGCACTTTTAGTGGAATTTGGAATGGTGGAGGAGGAAATGGACAGAAAAACCTTTTTGCTTCTTCTTCTTTCTTTTATCTACCTGAAGATACCGGTATGGTTGATGCAAGCACACATAATTTCATACTTCGCCCGATCGATATTGAGACTAAAGCTAAAGAAGCTTGTGCATTAAAATTTGAGGATGCAAAAACAGCTTATCCGTTTCTTGATAAGAAAAATGTAGCTTCTTATGTATGCATGGATCTTATATATCAGTATGTGTTGCTCGTTGAAGGATTTGGTCTTGATCCATTGCAAAAGATTACATCAGGGAAGGAAATTGAATATCAAGATGCTATTGTGGAAGCTGCATGGCCTCTAGGCAGTGCCGTAGAAGCCATATCAGCTTTACCTAAATTTGAACGATTGATGTATTTTGTTTAA 1371 0.38 MEFLIKLITFLLFSLPAITFSQSLGNNNLLTNRKIFQKQEEISSYAVVFDAGSTGSRIHVYHFNQNLDLLHIGKGVEYYNKITPGLSSYANNPEQAAKSLIPLLEQAENVVPEDLQPKTPVKLGATAGLRLLNGDASAKILQSVRDMLSNRSTFNVQPDAVSIIDGTQEGSYMWVTVNYALGNLGKKYTKTVGVIDLGGGSVQMTYAVSKKTAKNAPKVADGDDPYIKKIVLKGIPYDLYVHSYLHFGREASRAEILKITPRSPNPCLLAGFDAIYTYSGEDFKATAPASGANFNRCKNTIRKALKLNYPCPYENCTFSGIWNGGGGNGQKNLFASSSFFYLPEDTGMVDASTHNFILRPIDIETKAKEACALKFEDAKTAYPFLDKKNVASYVCMDLIYQYVLLVEGFGLDPLQKITSGKEIEYQDAIVEAAWPLGSAVEAISALPKFERLMYFV 456
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g01977 456 Gene3D Exopolyphosphatase. Domain 2 165 424 - -
Vifa5g01977 456 Pfam GDA1/CD39 (nucleoside phosphatase) family 39 447 IPR000407 GO:0016787
Vifa5g01977 456 Gene3D - 45 439 - -
Vifa5g01977 456 ProSitePatterns GDA1/CD39 family of nucleoside phosphatases signature. 164 179 IPR000407 GO:0016787
Vifa5g01977 456 FunFam Ectonucleoside triphosphate diphosphohydrolase 5 45 176 - -
Vifa5g01977 456 PANTHER ADENOSINE/GUANOSINE DIPHOSPHATASE 11 445 IPR000407 GO:0016787
Vifa5g01977 456 CDD NBD_sugar-kinase_HSP70_actin 47 237 - -
Vifa5g01977 456 FunFam Apyrase 1 165 424 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g01977 Vifa-Chr5 657661055 657663339 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g01977 44 445 Calmodulin-binding Proteins AT3G04080 52.109 1.26e-144 420
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g01977 K14641 - ag:CAA83655 842.032