Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g01975 ATGCTGAAGCGTCCTGGCCGTCAGGAGTCGATCTCCGATAAGATCTACAGATTCCGAGGGACTCTGCTTGTTGTCTCGATCCCGCTCGTTCTTATCACGTTTGTTCTTTACATGATGCCTTCCAGCTCGAATTACGAGTCTGCTGGAGATTACGCTCTTGTTAATCGGAAAATTTCACCGGATAAAAAGTCCGGTGGCTCATATGCCGTAATTTTCGATGCTGGTAGCTCTGGCAGCCGCGTTCATGTTTTCCATTTCGATCATAAACTAGATCTCGTTCATATTGGCAAAGATCTCGAACTTTTCGAGCAGCTTAAACCAGGTTTGAGCGCTTATGCTAAGAATCCGAAGCATGCAGCGGAATCTCTGATTTCTCTCTTGGACAAAGCGGAGAGTGTTGTTCCTCGTGAATTGAGATCAAAGACACCAGTTCGAGTTGGGGCAACTGCAGGTTTGAGGTCTTTGGAAGGGGATGCATCTGATAAGATATTGCAAGCGGTTAGGGATTTGCTTAAGCACAGAAGCACGTTGAAATCTGATGCTGATGCGGTTACGGTGCTGGATGGAACACAAGAAGGTGCTTTTCAATGGGTTACCATTAACTATCTATTGGGAAACTTGGGAAAAGATTATTCCAAGACTGTTGGGGTAGTTGATCTTGGAGGTGGATCTGTACAAATGGCATATGCCATCTCTGAGTCTGATGCTGCCATGGCTCCAAAAGTAAAGGATGGAGATGATCAATATGTCAAGGAGATGTTCCTGAGGGGAAGAAAATATTACCTCTATGTTCACAGTTACTTGCGCTATGGTTTACTAGCTGCCCGTGCTGAGATTTTAAAGGCTACCGGTGATGCTGAAAACCCGTGTATCTTATCTGGCTATGATGGATCTTACAACTATGGAGGAAAATCACTTAAGGCATCATCCTCTGGAGCAAGCTTAAATGAATGCAAAAGCGTAGCTCTCAAGGCTCTCAAAGTCAATGAGTCATTGTGTACACATATGAAGTGCACTTTTGGTGGGATATGGAATGGTGGAGGTGGGGATGGACAGAAAAACCTCTTTGTTGCCTCATTTTTCTTTGACCGGGCTGCTGAGGCTGGTTTTGCTGATCCAAACAAACCAGTTGCTATAGTTCAACCCTCCCATTTTGAAGAAGCTGCCAAACAGGCTTGTCAAACAAAACTCAAGAATGCCAAATCCACTTATCCACGAGTTGAAGAAGGGAACCTTCCATATCTTTGCATGGATCTTGTTTACCAGTATACCTTGCTTGTTGATGGGTTTGGCATATACCCATGGCAAGAGATTACATTGGTAAAGAAAGTTAAATACGAAGATGCCCTTGTTGAGGCAGCTTGGCCGCTAGGAAGCGCTATTGAAGCTGTATCGGCTATATAA 1404 0.4444 MLKRPGRQESISDKIYRFRGTLLVVSIPLVLITFVLYMMPSSSNYESAGDYALVNRKISPDKKSGGSYAVIFDAGSSGSRVHVFHFDHKLDLVHIGKDLELFEQLKPGLSAYAKNPKHAAESLISLLDKAESVVPRELRSKTPVRVGATAGLRSLEGDASDKILQAVRDLLKHRSTLKSDADAVTVLDGTQEGAFQWVTINYLLGNLGKDYSKTVGVVDLGGGSVQMAYAISESDAAMAPKVKDGDDQYVKEMFLRGRKYYLYVHSYLRYGLLAARAEILKATGDAENPCILSGYDGSYNYGGKSLKASSSGASLNECKSVALKALKVNESLCTHMKCTFGGIWNGGGGDGQKNLFVASFFFDRAAEAGFADPNKPVAIVQPSHFEEAAKQACQTKLKNAKSTYPRVEEGNLPYLCMDLVYQYTLLVDGFGIYPWQEITLVKKVKYEDALVEAAWPLGSAIEAVSAI 467
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g01975 467 Gene3D - 68 461 - -
Vifa5g01975 467 PANTHER ADENOSINE/GUANOSINE DIPHOSPHATASE 11 466 IPR000407 GO:0016787
Vifa5g01975 467 FunFam Apyrase 1 188 445 - -
Vifa5g01975 467 ProSitePatterns GDA1/CD39 family of nucleoside phosphatases signature. 187 202 IPR000407 GO:0016787
Vifa5g01975 467 Gene3D Exopolyphosphatase. Domain 2 188 445 - -
Vifa5g01975 467 CDD NBD_sugar-kinase_HSP70_actin 70 229 - -
Vifa5g01975 467 Pfam GDA1/CD39 (nucleoside phosphatase) family 66 466 IPR000407 GO:0016787
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g01975 Vifa-Chr5 657142839 657147695 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g01975 6 466 Calmodulin-binding Proteins AT3G04080 69.330 0.0 621
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g01975 K14641 - gmx:100786073 820.461