Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g01974 ATGGTCGGAGCTATCAAGGCTGCACTCGGCGACGCAGTGTTAACATTCATGTGGGTTTTTTCTTCATCCATGTTAGGTATAGTTTCAAAGGCAATAACACAAGCACTTGGTGTTCAAGATGTTTCTTACAACGGTTTCCCTTACCCTTCTCTGATTATCACCACTACCGTTGTCTTTCTTCTTGTTTTTCTCTTTACCTTAATTGGTGCTGCAATGGGTGGTGCTAGCTTTAACCCTACTGGTACTGCTGCTTTTTACTCCGTTGGTATTGGTTCCGATACGCTTTTTTCCATGGCTCTTCGTTTTCCTGCTCAGGCTCTTGGTGCTGCCGGTGGTGCAATGGCAATTGCGGAGTTGATTCATCCGAAATACAAACACATGATTGGGGGACCTTCTTTGAAAGTGGACTCGCATACCGGGGCTCTTGCTGAATTGGTTTTGACATTTGTGATTACTTTTGCGGTTCTCTGCATTTTCATCAAAGGGCCTCGTAATGATTTATTGAAGATTTGGTTGCTGGCCATGTCAACCGTCACTTTGGTCATGGTTGGCTCTGCTTACACTGGTCCATCCATGAACCCAGCCAATGCCTTTGGTTGGGCATACTTAAACAACAGGCACAACACATGGGACCAATTCTATGTCTACTGGATTTGCCCCTTCACTGGAGCAATATTGGCTGCTTGGCTATTCCGCGCCGTCTTCCCTCCACCTGAAGTAAAAGAGAAGAAAAAGAAAGCATGA 744 0.4543 MVGAIKAALGDAVLTFMWVFSSSMLGIVSKAITQALGVQDVSYNGFPYPSLIITTTVVFLLVFLFTLIGAAMGGASFNPTGTAAFYSVGIGSDTLFSMALRFPAQALGAAGGAMAIAELIHPKYKHMIGGPSLKVDSHTGALAELVLTFVITFAVLCIFIKGPRNDLLKIWLLAMSTVTLVMVGSAYTGPSMNPANAFGWAYLNNRHNTWDQFYVYWICPFTGAILAAWLFRAVFPPPEVKEKKKKA 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g01974 247 PRINTS Major intrinsic protein family signature 143 161 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vifa5g01974 247 PRINTS Major intrinsic protein family signature 58 82 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vifa5g01974 247 PRINTS Major intrinsic protein family signature 174 196 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vifa5g01974 247 PRINTS Major intrinsic protein family signature 214 234 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vifa5g01974 247 PRINTS Major intrinsic protein family signature 6 25 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vifa5g01974 247 PRINTS Major intrinsic protein family signature 97 116 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vifa5g01974 247 SUPERFAMILY Aquaporin-like 4 239 IPR023271 -
Vifa5g01974 247 Gene3D Glycerol uptake facilitator protein. 3 246 IPR023271 -
Vifa5g01974 247 FunFam Aquaporin SIP1-1 2 247 - -
Vifa5g01974 247 Pfam Major intrinsic protein 4 231 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vifa5g01974 247 PANTHER AQUAPORIN SIP1-1 3 246 IPR044222 GO:0015250
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g01974 Vifa-Chr5 656951830 656955100 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g01974 2 247 Major Intrinsic Protein MIP AT5G18290 55.242 7.94e-84 248
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g01974 K09875 - gmx:102669186 375.555
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa5g01974 5 656951830 656955100 Vifa5g01974 5 656951830 656955100 ECH