Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g01963 ATGGCTGATGGTGAATCCGACAAGAACATTGAGATATGGAAGATCAAAAAGTTGATCAAAGCATTGGAAGCTGCAAGAGGTAATGGTACTAGCATGATTTCTCTGATAATGCCTCCACGCGATCAAATATCTCGTGTCACTAAGATGTTGGGAGATGAATATGGAACTGCTTCAAATATCAAGAGTAGGGTTAACCGACAATCTGTGCTTGGAGCCATTACTTCTGCTCAACAGAGGTTGAAACTGTATAATAAGGTTCCTCCGAATGGATTGGTTCTTTATACTGGTACCATTGTCACTGACGATGGGAAGGAAAAGAAAGTGACTATTGATTTTGAACCTTTCAAACCAATTAATGCATCACTTTATCTCTGTGATAACAAGTTTCACACAGAAGCTCTAAATGAACTTCTAGAATCTGATGACAAGTTTGGTTTTATAATTATGGATGGAAACGGAACCCTTTTCGGGACTCTGAGTGGAAATACTCGTGAGGTGCTTCATAAGTTTACTGTTGATCTACCAAAGAAACACGGTAGAGGAGGGCAGTCAGCTCTGCGTTTTGCTCGTCTTCGTATGGAAAAACGACACAATTATGTTAGGAAGACTGCAGAACTTGCTACTCAGTTTTACATCAACCCTGCTACTAGTCAGCCTAATGTTGCCGGACTCATACTTGCTGGTTCGGCCGACTTCAAGACTGAGCTTAGCCAGTCAGATATGTTTGATCCTCGCTTGCAAGCAAAAATATTGAACGTGGTCGATGTTTCCTATGGTGGGGAAAATGGATTTAATCAAGCTATTGAATTATCTGCTGAGATTCTATCCAATGTGAAGTTCATACAAGAGAAACGCTTGATAGGAAAATATTTCGAAGAGATAAGCCAAGAAACTGGGAAATATGTGTATGGAGTTGACGACACATTGAAGGCTCTAGAGATGGGCGCTGTTGAAACTCTCATTGTATGGGAAAATTTGGATATAAACAGGTACGTGCTGAAAAATGCTACAACCGGTGAGATTGTAATTAAGCATTTGAAGAAGGAACAAGAAAGTGATCAAAGCCAATTCCGTGATGCGGAAACCTCTGCAGAGTTGGAGGTTCAGGAGAAGCTGCCATTACTTGAGTGGTTTGCGAATGAGTACAAACGATTTGGATGCACGCTGGAATTTGTGACCAACAAATCTCAAGAAGGGTCACAGTTTTGCAGAGGGTTTGGTGGTATTGGAGGTATGCTTCGCTACCAGCTTGATATCAGATCATTTGATGAGTTATCTGATGATGATGGAGTGTACGAGGATTCTGATTAA 1311 0.4096 MADGESDKNIEIWKIKKLIKALEAARGNGTSMISLIMPPRDQISRVTKMLGDEYGTASNIKSRVNRQSVLGAITSAQQRLKLYNKVPPNGLVLYTGTIVTDDGKEKKVTIDFEPFKPINASLYLCDNKFHTEALNELLESDDKFGFIIMDGNGTLFGTLSGNTREVLHKFTVDLPKKHGRGGQSALRFARLRMEKRHNYVRKTAELATQFYINPATSQPNVAGLILAGSADFKTELSQSDMFDPRLQAKILNVVDVSYGGENGFNQAIELSAEILSNVKFIQEKRLIGKYFEEISQETGKYVYGVDDTLKALEMGAVETLIVWENLDINRYVLKNATTGEIVIKHLKKEQESDQSQFRDAETSAELEVQEKLPLLEWFANEYKRFGCTLEFVTNKSQEGSQFCRGFGGIGGMLRYQLDIRSFDELSDDDGVYEDSD 436
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g01963 436 FunFam Eukaryotic peptide chain release factor subunit 1 135 276 - -
Vifa5g01963 436 FunFam Peptide chain release factor subunit 1 278 436 - -
Vifa5g01963 436 SUPERFAMILY Translational machinery components 141 275 - -
Vifa5g01963 436 Pfam eRF1 domain 1 17 137 IPR005140 -
Vifa5g01963 436 Pfam eRF1 domain 2 143 276 IPR005141 -
Vifa5g01963 436 Gene3D - 278 436 IPR029064 -
Vifa5g01963 436 FunFam Eukaryotic peptide chain release factor subunit 1 1 134 - -
Vifa5g01963 436 SUPERFAMILY N-terminal domain of eukaryotic peptide chain release factor subunit 1, ERF1 6 139 IPR024049 -
Vifa5g01963 436 SUPERFAMILY L30e-like 277 419 IPR029064 -
Vifa5g01963 436 Gene3D eRF1 domain 1 1 134 IPR024049 -
Vifa5g01963 436 Gene3D eRF1 domain 2 135 276 IPR042226 -
Vifa5g01963 436 Pfam eRF1 domain 3 280 417 IPR005142 -
Vifa5g01963 436 NCBIfam peptide chain release factor aRF-1 11 416 IPR004403 GO:0003747|GO:0006415
Vifa5g01963 436 PANTHER PEPTIDE CHAIN RELEASE FACTOR SUBUNIT 1 4 428 IPR004403 GO:0003747|GO:0006415
Vifa5g01963 436 SMART eRF1_1_2 3 139 IPR005140 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g01963 Vifa-Chr5 651488674 651489984 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g01963 1 436 Eukaryotic Initiation Factors Gene Family AT3G26618 92.661 0.0 838
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g01963 K03265 - egr:104419069 816.224