Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g01925 ATGGAAATATCAAATAATACATTGATAGTGTCCCCAAAGTTTCGTAGAGTTTCCAAAAGCCCTCGGTTTATTTTGACTTTCCGACAATACGCGTGCAATTGCGTTTTTGCCAAAAATGGAAGCGGAGGCAAACTTGCACGTCCAAACAACAAGACTGGAGACACCTCCTTGTCAATCGTCTCTGAGCTTTCCGATCTCCGCCGCTCTCAATCCGTGTCACTCCCGCACCCAAAGAGTTCAACAAAGAGTGAAGGTTGGACCACAGTATGGTCCAAACCTGATAATATATGTCTTTATACTGTCAGTTCTGGTAGTGGTGTTTGTGGATACAATAGCTTCTGCACTTTGGGACAGGATAAGAGACCAACGTGTCAGTGTCCAAAAAGTTACTCTCTAGTTAATCCTGATGATCCATATGGTAGCTGCAAGCCAGATTTTATACAAGGATGTGAAGAAGATGAACTGAGTAAAAGAAACGATCTCTATGACTTTGAGGTTTTGATTAACACTGATTGGCCTTTCTCAGATTCTGTTCTTCAAAGGCCTTTTACTGAAGAACTGTGTAAAGAAGCTTGTATGGGAGATTGCATGTGTTCTGTGGCTATTTTCAGGTTAGGTGATAGTTGTTGGATGAAGAAGTTACCACTCTCAAATGGGAAAGTTGATCCTACACTTAATGGTGCTAAGGCTTTCTTGAAAGTGAGAAAAGATAATACCTCCCTCCAGTCCTTTGATTTTCCTCCATTTCCAATCATTGGGAACAAGAATAATAATAGGGAAACGTTGGTTTTGGTTGTTTCTGTGCTTTTTGGTAGCTCTGCTATTCTCAATGTTGTATTGCTTGTAGCAATATGTTTCAGCACCTCCATGATTGTTCAGTACAAGAAGAAGCTTAGAAGAGTTAGCAGAAGTGAAACTAGTGTTGAAACCAATTTGCGTTGCTTCACTTACGAAGAGCTTGAAGAAGCTACTAATGGATTTGACAAAGAGCTAGGAAGGGGAGCTTTTGGTATAGTTTATGAAGGAGTCGTCAACAACAACACATGTTCCGAAACTCGTGTGGCTGTGAAAAAGTTGAACAATTTTTTGTTGGATCAAGCTCATAGAGAATTCAGGAATGAACTGAATGTCATTGGTCTCACTCATCATAAGAACTTAGTTCGTTTACTTGGATTTTGTGAGGGTGGAAGTGAAATATTGCTTGTTTATGAGTACATGAGCAATGGCACTTTGGCAAGTTTACTTTTCAATGCTGATGAGAAACAGAAACCAAGTTGGAAACTAAGGCTTGAACTTGCAATAGGAATAGCAAGGGGACTTGTGTATTTACATGAAGAGTGCATTACTAGGATCATCCACTGTGACATAAAGCCTCAAAATATACTTCTTGATGATTACTTCAATGCAAGAATTTCTGACTTTGGACTAGCCAAGTTGATGAACATGAATCAAAGCAAAACCAACACTGGCATTAGGGGAACAAAAGGGTATGTTGCACTTGAATGGTTTAAGAACATGCCTATCACAGCTCAAGTGGATGTGTATAGTTATGGAGTAGTGCTACTTGAGATTATTTCATGTAGAAGATGTGTTCAAGAAATGGAACAAGAAGATGAAGAGAAAGAAATATTAACTGACTGGGCTTATGATTGCTACAAGGATGGTGCTGTAGATGCATTGGTTGAGGGTGACAATGAGGCATTGGATGACAAAGAAAAGTTGGAGAAATTGGTAATGATTACAATTTGGTGTGTTCAAGAGGATCCAGTTCTTAGACCAAGCATGAGAAATGTGATACATATGCTTGAAGGTACTGTTGAAGTGCAAGTTCCACCATACCCCTCACAAATTAGTATTCAATATTCTCTAATTTAA 1875 0.392 MEISNNTLIVSPKFRRVSKSPRFILTFRQYACNCVFAKNGSGGKLARPNNKTGDTSLSIVSELSDLRRSQSVSLPHPKSSTKSEGWTTVWSKPDNICLYTVSSGSGVCGYNSFCTLGQDKRPTCQCPKSYSLVNPDDPYGSCKPDFIQGCEEDELSKRNDLYDFEVLINTDWPFSDSVLQRPFTEELCKEACMGDCMCSVAIFRLGDSCWMKKLPLSNGKVDPTLNGAKAFLKVRKDNTSLQSFDFPPFPIIGNKNNNRETLVLVVSVLFGSSAILNVVLLVAICFSTSMIVQYKKKLRRVSRSETSVETNLRCFTYEELEEATNGFDKELGRGAFGIVYEGVVNNNTCSETRVAVKKLNNFLLDQAHREFRNELNVIGLTHHKNLVRLLGFCEGGSEILLVYEYMSNGTLASLLFNADEKQKPSWKLRLELAIGIARGLVYLHEECITRIIHCDIKPQNILLDDYFNARISDFGLAKLMNMNQSKTNTGIRGTKGYVALEWFKNMPITAQVDVYSYGVVLLEIISCRRCVQEMEQEDEEKEILTDWAYDCYKDGAVDALVEGDNEALDDKEKLEKLVMITIWCVQEDPVLRPSMRNVIHMLEGTVEVQVPPYPSQISIQYSLI 624
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g01925 624 ProSitePatterns Serine/Threonine protein kinases active-site signature. 451 463 IPR008271 GO:0004672|GO:0006468
Vifa5g01925 624 ProSitePatterns Protein kinases ATP-binding region signature. 331 358 IPR017441 GO:0005524
Vifa5g01925 624 FunFam S-receptor-like serine/threonine-protein kinase 294 405 - -
Vifa5g01925 624 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 80 614 - -
Vifa5g01925 624 Pfam Protein tyrosine and serine/threonine kinase 327 602 IPR001245 GO:0004672|GO:0006468
Vifa5g01925 624 SMART serkin_6 325 602 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa5g01925 624 SUPERFAMILY Protein kinase-like (PK-like) 306 615 IPR011009 -
Vifa5g01925 624 Gene3D Transferase(Phosphotransferase) domain 1 406 610 - -
Vifa5g01925 624 Gene3D Phosphorylase Kinase; domain 1 298 405 - -
Vifa5g01925 624 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 406 610 - -
Vifa5g01925 624 ProSiteProfiles Protein kinase domain profile. 325 603 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g01925 Vifa-Chr5 571739236 571742483 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g01925 311 614 Receptor kinase-like Gene Family AT1G60800 38.318 2.03e-68 231
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Vifa5g01925 PK_Tyr_Ser-Thr 2.8e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g01925 - - gmx:100776632 809.29