Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g01915 ATGAGTTTCCAAGATATTCAGAGCGGTTCCAATCCTCCTTCTCGGCGAACCCAGTCTCCGTCGCAAGCCGTCGCTGCCGGAATTTTCCAGATCAACACCGCCGTCGGTACTTTCCGGCGACTCGTTGACTCCGTCGGAACCGTTAAAGATACTCCAGAGCACCGTCAGAAACTCCACAATACGAGACAGAGGATATTGCAGCTTGTGAAGGATACTTCTGCCAAACTCAAATCGTTGCCTGAATCTAACCGTGATGCTAATGCCAATACGAGTAAGAAAATCGAAGATGCTAAGCTGGCAAGAGATTTCCAAACTACATTGCAAGAGTTTCAGAAAGTTCAACAGCTTGCTTCTGAGCGCGAATCAACTTATACTCCTGCTGCCCCTGCTTCTAACTTACCGACAAGCTCTGGCCCCGGTCATGAATCGATTGAGATAGACCCTGAAAGCCAACCTTTTATCAGAGGGCAGATGAGGCAAGAGATAGTTCTATTGGATAATGAAATATCCTTCAATGAAGCCATGATTGAAGAAAGAGATCAGGGTCTTAGAGAGATAGAAGAGCAAATTGGAGAAGCAAATGAAATATTCAAGGACCTTGCTGTTTTGGTTCATGATCAGGGGATTGTTATCGATGACATTCAATCAAATATAGATACTTCTGCTGGTGCAACAGCTCAAGGTAAGGTCCAGCTAGCCAAAGCTTCCAAAAGTGTGAAATCCAAAAATAAATGGTGTTGGTGGGTGCTTTTAATTTTTGTGGCAGTGCTGGTCATCGTACTCATTGTACTTCTTGCTTAA 801 0.4444 MSFQDIQSGSNPPSRRTQSPSQAVAAGIFQINTAVGTFRRLVDSVGTVKDTPEHRQKLHNTRQRILQLVKDTSAKLKSLPESNRDANANTSKKIEDAKLARDFQTTLQEFQKVQQLASERESTYTPAAPASNLPTSSGPGHESIEIDPESQPFIRGQMRQEIVLLDNEISFNEAMIEERDQGLREIEEQIGEANEIFKDLAVLVHDQGIVIDDIQSNIDTSAGATAQGKVQLAKASKSVKSKNKWCWWVLLIFVAVLVIVLIVLLA 266
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g01915 266 FunFam Syntaxin-22 like 166 266 - -
Vifa5g01915 266 Pfam Syntaxin-like protein 25 124 IPR006011 GO:0016020
Vifa5g01915 266 MobiDBLite consensus disorder prediction 1 22 - -
Vifa5g01915 266 PANTHER SYNTAXIN 22 254 IPR045242 -
Vifa5g01915 266 SMART tSNARE_6 168 235 IPR000727 -
Vifa5g01915 266 MobiDBLite consensus disorder prediction 119 143 - -
Vifa5g01915 266 Pfam SNARE domain 210 261 IPR000727 -
Vifa5g01915 266 CDD SNARE_Qa 176 234 - -
Vifa5g01915 266 MobiDBLite consensus disorder prediction 119 139 - -
Vifa5g01915 266 SUPERFAMILY t-snare proteins 19 228 IPR010989 GO:0016020|GO:0016192
Vifa5g01915 266 Gene3D - 167 266 - -
Vifa5g01915 266 SMART SynN_4 8 122 IPR006011 GO:0016020
Vifa5g01915 266 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 173 235 IPR000727 -
Vifa5g01915 266 Gene3D - 7 131 - -
Vifa5g01915 266 FunFam Syntaxin-22 like 15 128 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g01915 Vifa-Chr5 556881544 556884060 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g01915 1 253 SNARE and Associated Proteins AT5G46860 58.687 2.93e-100 292
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g01915 - - gmx:100787141 407.142