Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g01909 ATGAGTTCTACGAAAACAAAAAAGAAGCAAACGACAGGAACAACAAGCGAAACGACAACACAAGAACAGCAACAAACGGCATGGGGAGGAAGATACCTCGGAGTCCGAAGAAGACCATGGGGAAGATACGCCGCTGAGATTCGCGATCCTTCGACAAAAGAACGACACTGGTTAGGAACATTCGACACTGCTGAAGAAGCTGCTTTGGCTTACGACAGAGCCGCACGTGGCATGCGTGGCTCACGTGCTAGAACCAATTTCGTTTACGCCGATACACCTCCCGGTTCTTCTGTTACTCCGATCCTCTCCCCCGACCAACAACATCAACAAGAACAAGCTTTTCATGAACTCTCCTTTGTTCTTCAACATGAACCGTTTCCGGTTCAACATAACCCGGTTCAGTCTCTCGACTCGGTTTCTTTCGTAACATCAACCGGTAATTACGGTTACGGTTATGGTGAGGAAAACAATAATATTAATTTTAATAAATATAATCTTCCTCCTCATGTTCCTCTTGCTACATTGGAAGCTAGTATTAATAATAACAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATGAAAATTCTTATTTTAACCAACAAGTGTTTTTTGAGGATGTTGTTGTTAGTAGTAGTAGTGACACCAATAGCATTGAGCTTCCGCCTTTGCCGCCGGATATAACTAGCTCGGCGTGTTATGATCAGGCGTTCAACGGTGGTGATCATGATCACGGGTATTATTATTCATCATGGGAGCAGAATGTTGGAGGAGATTGTTATAATAATCAAATGTTGGGTTCGAATGTTGGAGGTGTCGGAGTTACGGAGAATAATGTTATGGCAAGTTCTATTGATGGTTTTGATTTCGGAGGCTCTTCATTTTTCTTCTGA 912 0.4046 MSSTKTKKKQTTGTTSETTTQEQQQTAWGGRYLGVRRRPWGRYAAEIRDPSTKERHWLGTFDTAEEAALAYDRAARGMRGSRARTNFVYADTPPGSSVTPILSPDQQHQQEQAFHELSFVLQHEPFPVQHNPVQSLDSVSFVTSTGNYGYGYGEENNNINFNKYNLPPHVPLATLEASINNNNNNNNNNNNNNNNNNNNNENSYFNQQVFFEDVVVSSSSDTNSIELPPLPPDITSSACYDQAFNGGDHDHGYYYSSWEQNVGGDCYNNQMLGSNVGGVGVTENNVMASSIDGFDFGGSSFFF 303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g01909 303 Pfam AP2 domain 32 80 IPR001471 GO:0003700|GO:0006355
Vifa5g01909 303 SUPERFAMILY DNA-binding domain 31 88 IPR016177 GO:0003677
Vifa5g01909 303 FunFam Ethylene-responsive transcription factor 2 31 89 - -
Vifa5g01909 303 Gene3D AP2/ERF domain 30 89 IPR036955 GO:0003700|GO:0006355
Vifa5g01909 303 PRINTS Ethylene responsive element binding protein signature 54 70 IPR001471 GO:0003700|GO:0006355
Vifa5g01909 303 PRINTS Ethylene responsive element binding protein signature 32 43 IPR001471 GO:0003700|GO:0006355
Vifa5g01909 303 CDD AP2 31 87 IPR001471 GO:0003700|GO:0006355
Vifa5g01909 303 SMART rav1_2 31 94 IPR001471 GO:0003700|GO:0006355
Vifa5g01909 303 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 11 205 - -
Vifa5g01909 303 MobiDBLite consensus disorder prediction 178 202 - -
Vifa5g01909 303 Coils Coil 172 192 - -
Vifa5g01909 303 MobiDBLite consensus disorder prediction 1 28 - -
Vifa5g01909 303 MobiDBLite consensus disorder prediction 1 30 - -
Vifa5g01909 303 ProSiteProfiles AP2/ERF domain profile. 31 88 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g01909 Vifa-Chr5 552673346 552674257 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g01909 15 103 AP2-EREBP Transcription Factor Family AT5G13910 75.281 1.29e-44 149
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Vifa5g01909 AP2 1.3e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g01909 K09286 - gmx:100815668 181.415