Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g01899 ATGTCAAGTTCTCTTGCAGCAATAATAGGAGGAGCTGCAGGAGCCGCGGCATTGGTAGGGATATCTATAATACTTTTATGGTTTTGTTTGTTTCGCCAAACAAGCGTTTCTAGAACTTCAGAGACAGGATCTTCCGATCCTTCACAGGTGGGAAGACATGGTGGAATTGAGTTGCAAATGCGAGATACTAGGCATTTTGCAATGGAAGAACTCTCTCACGCAACAAAGAATTTCACTGACAAAAATTTGATTGGAGAAGGGAAATTTGGTGAGGTTTACAAAGGCTTACTTCAAGATGGGATGCTTGTAGCTATCAAGAAGCGCCACAGTGTGATTAGTCAGGAATTCGTTGATGAGGTACGCTATCTTTCATCCATTCAACATCGGAATCTAGTTACTCTTATCGGATATTGCCAAGAAAACAATCTACAGTTTCTTATATACGAATATGTGCCGAATGGAAGCGTCTCCAGTCACTTGTATGGTGCTAGTCAACAACCACGAGAGAGGCTAGAATTCAAGCATAGACTCTCAATAGCTCAAGGTGCAGCTAAAGGTTTGGCTCATCTTCATTCTTTGAGTCCGCGTTTGGTGCATAAGAATTTCAAAACATCTAATGTTCTTGTCGATGAAAACTTCATTTCTAAGGTCGCGGATGCAGGGCTTCGTAATTTTCTAGGGAGAGTTGAAATTGTAGGCTCGTCTTCACAAGTGGCATCAGATGAGATATTTCTTGCACCTGAGGTGAGAGAGTTCAGACAATTTTCTGAGAAGAGCGATGTGTATAGCTTTGGGGTATTTTTGTTGGAATTGTTGAGTGGGAAGGAAGCAACAGAATCACCCTCTATAAACACAAGTCAAAATCTGGTTGAATCGGTGCTAAGTAATCAAGACAGCAGCACCATGTCTGCGATCATTGATCAAAGAATGGAAAGTAGATTCACAGCTGAAGGAATGGAAAACTACATTCTACTCTTAATAAGATGTTTGGATCCTTCAAGTGAAAGAAGACCTTCCATGAGCTACGTCGAAATGGAACTCGACCGAATCCTCGAAAAAGAGATGAACTTAACAACAATGATGGGTGAAGGAACACCAACTGTAACTCTTGGAAGTCAATTATTCAAATCAACTAAATAA 1140 0.4079 MSSSLAAIIGGAAGAAALVGISIILLWFCLFRQTSVSRTSETGSSDPSQVGRHGGIELQMRDTRHFAMEELSHATKNFTDKNLIGEGKFGEVYKGLLQDGMLVAIKKRHSVISQEFVDEVRYLSSIQHRNLVTLIGYCQENNLQFLIYEYVPNGSVSSHLYGASQQPRERLEFKHRLSIAQGAAKGLAHLHSLSPRLVHKNFKTSNVLVDENFISKVADAGLRNFLGRVEIVGSSSQVASDEIFLAPEVREFRQFSEKSDVYSFGVFLLELLSGKEATESPSINTSQNLVESVLSNQDSSTMSAIIDQRMESRFTAEGMENYILLLIRCLDPSSERRPSMSYVEMELDRILEKEMNLTTMMGEGTPTVTLGSQLFKSTK 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g01899 379 Pfam Protein tyrosine and serine/threonine kinase 82 346 IPR001245 GO:0004672|GO:0006468
Vifa5g01899 379 Gene3D Phosphorylase Kinase; domain 1 50 150 - -
Vifa5g01899 379 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 15 356 IPR047117 -
Vifa5g01899 379 FunFam Protein kinase superfamily protein 43 150 - -
Vifa5g01899 379 SUPERFAMILY Protein kinase-like (PK-like) 59 344 IPR011009 -
Vifa5g01899 379 ProSitePatterns Protein kinases ATP-binding region signature. 84 107 IPR017441 GO:0005524
Vifa5g01899 379 Gene3D Transferase(Phosphotransferase) domain 1 151 365 - -
Vifa5g01899 379 FunFam Protein kinase superfamily protein 151 364 - -
Vifa5g01899 379 ProSiteProfiles Protein kinase domain profile. 78 351 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g01899 Vifa-Chr5 549618415 549620440 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g01899 64 352 Receptor kinase-like Gene Family AT1G30570 39.796 5.91e-61 208
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXa Vifa5g01899 PK_Tyr_Ser-Thr 5.8e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g01899 - - tpra:123888647 676.011