Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g01879 ATGTCGCAACGCAGATCGAGTTCTCGAATCCAAGCAGCTAAGCTGAAAGAAGTCGAAGAGGTGAAGCTACGACGGAGTGTAGAGGTGGTTGAAGAACGAAAGAAATCGAGCGTGGTTGTGACGGCTAAGGGGAAGTCGAACAAGCGCGTTAAGAAAAGTCACGGCGAGGAAGAGAGCGCGGTTAAAGAAGAGGTTGTGTCTGATTTGCAGACGAAGAGCAATGAAGAGGTTGCTTCGGAGAAGCAGATGAAGAAGAAGTCTGCACTGGATGCGAAGCGTGAGCTGATGGAAGTTTGGGATGAAAAAATGAAGGTGGATTCGGAAAATCCAGCTGATGCATCAGCTGAAAAGAGTTATGCCGCTAAGGTGAAAGATACGATTAGAGTGTTTAATAAACACTATCTCCATTTGGTTCAGGAAGAAGAGGAGAGGTGTGTTCAAGCAAGAACCGAAGCCGAGAAGAAGAACAAATCTCCCAAGAAATCTCCTGCGAAGAAATCTACTAAAAACTCTAAATCATCTGCTGGAAAGAAAAATGCTAAGAAAGATACGTTGCCTACAGAACCAAAGACCCCTGCCAAGCGACCTGATCTGAAGGCCTTAACCAAGATGATGCAAAATAATGAGATACTGTTCCCTGAAAAAAGAATTGGCGATATTCCAGGTGTCGAGGTTGGATATCAGTTCTATTCTCGTGCGGAAATGGTGGCTATTGGTTTTCATAGCCACTGGTTAAATGGCATTGACTATATGGGCCAGTCTTATTCCAAAGAGTACAACAGCTACAATCTCCCAGTTGCTGTGGCCATTGTTATTTCTGGAATGTATGAAGATGACCTTGATAATGCCGAAGATGTCATTTACACTGGTCAAGGTGGCCACAACCTGACTGGTAATAAGCGTCAAATGGGAGATCAGAAAATGGAGCGGGGTAATTTGGCACTTAAGAACTCTTCAGAGCAATGTGTGCCAGTAAGGGTAATTCGAGGTCACAACTCTCGTGACAGTTATACTCGTAAAGTTTATACATATGATGGATTGTACAAGGTTGTCAATTATTGGGCAGAGAAGGGAATATCTGGCTTCACAGTCTACAAGTTTCGGCTTAGGAGGGTTGATGGACAGCCTACTTTAACCACGAATCAGGTTTATTTCACAAGTGGACGCGTACCTCAGTCTGTTGCAGAAATACGAGGGCTGGTATGTGAGGATATCACTGGAGGTCAGGAAGATGTCCCCATACCTGCTACAAATTTGGTTGATGATCCCCCTGTTCCACCTACAGGTTTCAAATATTTTAAGTCTCTCAAGGTTGCAACAAGTGTTAAGCTTCCTGTGAATGCCTCTGGGTGCAAATGCAAAGGCAGTTGTACTGATCCAAAAACCTGTGAATGTGCGAAGCGCAATGGCTCTGAGTTTCCCTATGTATCTAAGGATGGTGGCAGATTGGTTGAAGCTAAAGATGTCGTGTTTGAATGTGGCCCCAATTGTGGTTGTGGTCCTAGTTGTATGAATCGGATTTCTCAAAAAGGACCTCGATATCGTCTGGAGGTTTTTCGCACTGCAAAAAAAGGATGGGCTGTACGATCCTGGGATTTTATTCCATCTGGGGCACCCGTGTGTGAGTACACGGGTATTCTCGGCAGGACTGACGACGTAGACAGTTGTTTAGAAAACAACTATATATTTGAGATCGATTGCCTCCAGACTATTAAAGGTCTTGGGGGAAGGGAGAGGCGGTCGCAAAATGTACCATATGCTGCCAATCTTTTGGACAAATATGATGACCAAAGTCCCGATAGTGCACCGGAGTTTTGTATTGACGCAGGATCTACTGGAAACATTGCTAGGTTTATTAACCATTGTTGTGAGCCTAATTTGTTTGTACAATGTGTTTTGAGCACACACCATGATTTGCGTTTGGCTCGAGTGATGCTGTTTGCTGCTGACAACATACCCCCTTTACAGGAGCTGACATATGACTATGGCTACGCTCTTGATAGCGTCTTGGACTCTGATGGGAAGATAAAGCAAATGGCGTGTTACTGTGGAGCTTCAGGCTGCAGAAAGCGATTATTCTAA 2082 0.4448 MSQRRSSSRIQAAKLKEVEEVKLRRSVEVVEERKKSSVVVTAKGKSNKRVKKSHGEEESAVKEEVVSDLQTKSNEEVASEKQMKKKSALDAKRELMEVWDEKMKVDSENPADASAEKSYAAKVKDTIRVFNKHYLHLVQEEEERCVQARTEAEKKNKSPKKSPAKKSTKNSKSSAGKKNAKKDTLPTEPKTPAKRPDLKALTKMMQNNEILFPEKRIGDIPGVEVGYQFYSRAEMVAIGFHSHWLNGIDYMGQSYSKEYNSYNLPVAVAIVISGMYEDDLDNAEDVIYTGQGGHNLTGNKRQMGDQKMERGNLALKNSSEQCVPVRVIRGHNSRDSYTRKVYTYDGLYKVVNYWAEKGISGFTVYKFRLRRVDGQPTLTTNQVYFTSGRVPQSVAEIRGLVCEDITGGQEDVPIPATNLVDDPPVPPTGFKYFKSLKVATSVKLPVNASGCKCKGSCTDPKTCECAKRNGSEFPYVSKDGGRLVEAKDVVFECGPNCGCGPSCMNRISQKGPRYRLEVFRTAKKGWAVRSWDFIPSGAPVCEYTGILGRTDDVDSCLENNYIFEIDCLQTIKGLGGRERRSQNVPYAANLLDKYDDQSPDSAPEFCIDAGSTGNIARFINHCCEPNLFVQCVLSTHHDLRLARVMLFAADNIPPLQELTYDYGYALDSVLDSDGKIKQMACYCGASGCRKRLF 693
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g01879 693 MobiDBLite consensus disorder prediction 50 89 - -
Vifa5g01879 693 SMART G9a_1 213 375 IPR003105 -
Vifa5g01879 693 Pfam SAD/SRA domain 217 375 IPR003105 -
Vifa5g01879 693 Gene3D - 201 388 IPR036987 -
Vifa5g01879 693 ProSiteProfiles Pre-SET domain profile. 449 511 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Vifa5g01879 693 ProSiteProfiles SET domain profile. 514 663 IPR001214 GO:0005515
Vifa5g01879 693 SMART set_7 514 669 IPR001214 GO:0005515
Vifa5g01879 693 Pfam SET domain 525 663 IPR001214 GO:0005515
Vifa5g01879 693 SUPERFAMILY SET domain 399 669 IPR046341 -
Vifa5g01879 693 MobiDBLite consensus disorder prediction 148 199 - -
Vifa5g01879 693 Gene3D SET domain 395 693 IPR046341 -
Vifa5g01879 693 MobiDBLite consensus disorder prediction 176 197 - -
Vifa5g01879 693 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 30 693 IPR025794 GO:0016571
Vifa5g01879 693 MobiDBLite consensus disorder prediction 42 89 - -
Vifa5g01879 693 SMART preset_2 402 498 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Vifa5g01879 693 ProSiteProfiles YDG domain profile. 218 371 IPR003105 -
Vifa5g01879 693 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETMAR 37 686 - -
Vifa5g01879 693 Coils Coil 138 158 - -
Vifa5g01879 693 ProSiteProfiles Post-SET domain profile. 677 693 IPR003616 -
Vifa5g01879 693 SUPERFAMILY PUA domain-like 200 390 IPR015947 -
Vifa5g01879 693 Pfam Pre-SET motif 406 506 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g01879 Vifa-Chr5 545802964 545811362 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g01879 204 693 EF-hand Containing Proteins AT5G13960 66.870 0.0 714
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Vifa5g01879 SAD_SRA 5e-50 CL0178
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g01879 K11420 - mtr:25496588 978.393