Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g01873 ATGTCCATCTTGCCCTCACAAACCCAATCGGCATCTTCGTCTTCTTCGTCTTTACCAATCCCTAACCCTAATTCACAACATGGAGTTTCAGAAATCGCCTCTTCTCTTTCCCCTCAACTCAACCATGCTCTCGGATCTCTCCAGATCTCCGATTATCCAGGTCCATCAACTCCAGCTGCAGAAGATTCTGGTAGACCCTCCGAAAAGGTGACGGAGCTAGAGTCTTCAAGTGGTATGAAGGCACCTCAGCGAAACTCTAGATCACATTCTAGGAGTCACTCAGGAAGACGTACAGTTGGACTCTCCCAGTCTGAGGGGATGACGACGGGAACAATTTCTTCTCATAGAAATCAACAGGCTACTGGATCTGTATATTCTCAAGGAAGCACTCCTTTCGGAGGAAGGAAATCTCAGATGGCTAATGGCAATCACTTACTCAACTTTCAGTATGATCCAATATCCCGTTCCCAACAAAGGGGTCCTCCTCCTCCCCCTCCAGCACGAAGGCAGCGGAAGAGAAGACCATACAACAAAGATTTGTTTTTGCAGGCAAATTTCAAATTCATGGTGCTAGATTCGGGAAATTATTCCCCCGAGTCAATGGATCCAGATAAAATGTTACAGTGGGAAGATATTATATGTGTGACATATTCGACACCCTCTCCAATTCAGTGTCCAATTTGTCTGGAGCATCCCCTGTGTCCCCAAATAACCTCATGTGGACACATTTTTTGTTTCCCATGTATTTTACAATACTTGATGTTGGGTGAAGAAGATCACAAAGGTGATTGCTGGAAAAGGTGTCCGTTGTGCTTTGTGATGATATCTGTCAAGGACTTATATACAGTCCACATCACAAATGTCAAACAGTATCAAGTAGGAGATAATATTGAGTTCACTTTCTTAACAAGGAAGAAGGATTCATTTACTCTTTCGCATAAAAATAAACCAGAGACTGATAACTCATCATGTGGCCAAGGAGATGTATGTGATCCCTTTTCTAAGCTCACACTCACATTAGATGTAGATCTCTCAGCGAGACATGCAATATCAGACCTAGATGGTTGGCTGGCCAAAGCTGATTCAGGTCTTGTCGACGACCTCGAGAAGCTTCCATATGTACCATCAATATCTGCAAATGCTGTGGATACTGATGATGAAAACTGTTCTAATGGATCAAGAACTTCCTCTACTGATTTCCCCGATCAAAGCAAGGTTGTAATATTGGATAAATCAACTGCTGGTGGCTGTCAGGATGAAACTTTGGACCCGGAAAAAAAACTAATAGAGCAGGAAATGAATTTGTCTTCTTCGTATGAGGAGAAAAAATGTATTCAAGGCCATTCAAATGGCATTGCAGACGCAAAGGAAAATGACTCTTACAATTTTTATCAGGCGGCTGATGGGCAACATCTAATTCTTCATCCTTTGAACACCAAGTGTTTACTGCATCATTATGGTAGCTATGATAAGCTCCCTCACAGAATAAGTGGAAGGATTCTACAATTGGAGACAGTTACTCAATCTGAGGCTATGAGGAGGCGGTATCGATTTTTAAGTCATTTTCCATTAACCACAACTTTTCAGCTCTGTGAAGTTGATTTGAGTGAGATGTTGCCTGCTGAAGCACTGGCCCCATTTTTGGATGAAATAAAGAACCGTGCAAACCAGAGGAAGCAACTCGCAAAGAAGGAACTGAAGGAAAAATTAAAGGCTGAAGCTACTTCTAATTATGCTCTTTCCATGTCAACCCATTATCAGTTTATTTCTCGTGATGATCCTCCCACGTTCTCCATGGACGACTTTGAAGCTCTAGGAAATTCCGCTCTGTCATCAAGTCCACCCGTTGTCGGTGAGAGGAAATTGTTCTCAAGTGTGACTAGGCTTGGTTTTGCTGCTGCTCATGATTCTCCATCCTTTCAAGCTCAAGAAACTAGCAATCTACACAATAACAATTCGATTGCTGATTCTTCTGGTTTGAGGAACGGGGAGATACTATCATACTCCAATGTCATATCTAAAGCAGAATCTAATGGAAGTTCGAATGCACCAAAGACAAATGACACAGGAAAGAAGGGAAAGAAACCAAATCGAGTTCTTCTGTCAACAGCTGGTGGCAGGCGTTATTGA 2130 0.4244 MSILPSQTQSASSSSSSLPIPNPNSQHGVSEIASSLSPQLNHALGSLQISDYPGPSTPAAEDSGRPSEKVTELESSSGMKAPQRNSRSHSRSHSGRRTVGLSQSEGMTTGTISSHRNQQATGSVYSQGSTPFGGRKSQMANGNHLLNFQYDPISRSQQRGPPPPPPARRQRKRRPYNKDLFLQANFKFMVLDSGNYSPESMDPDKMLQWEDIICVTYSTPSPIQCPICLEHPLCPQITSCGHIFCFPCILQYLMLGEEDHKGDCWKRCPLCFVMISVKDLYTVHITNVKQYQVGDNIEFTFLTRKKDSFTLSHKNKPETDNSSCGQGDVCDPFSKLTLTLDVDLSARHAISDLDGWLAKADSGLVDDLEKLPYVPSISANAVDTDDENCSNGSRTSSTDFPDQSKVVILDKSTAGGCQDETLDPEKKLIEQEMNLSSSYEEKKCIQGHSNGIADAKENDSYNFYQAADGQHLILHPLNTKCLLHHYGSYDKLPHRISGRILQLETVTQSEAMRRRYRFLSHFPLTTTFQLCEVDLSEMLPAEALAPFLDEIKNRANQRKQLAKKELKEKLKAEATSNYALSMSTHYQFISRDDPPTFSMDDFEALGNSALSSSPPVVGERKLFSSVTRLGFAAAHDSPSFQAQETSNLHNNNSIADSSGLRNGEILSYSNVISKAESNGSSNAPKTNDTGKKGKKPNRVLLSTAGGRRY 709
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g01873 709 ProSiteProfiles Zinc finger RING-type profile. 225 271 IPR001841 -
Vifa5g01873 709 SMART ring_2 225 271 IPR001841 -
Vifa5g01873 709 FunFam RING finger protein 10 218 286 - -
Vifa5g01873 709 SUPERFAMILY RING/U-box 224 278 - -
Vifa5g01873 709 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 215 322 IPR013083 -
Vifa5g01873 709 CDD RING-HC_RNF10 223 280 - -
Vifa5g01873 709 MobiDBLite consensus disorder prediction 1 140 - -
Vifa5g01873 709 MobiDBLite consensus disorder prediction 675 709 - -
Vifa5g01873 709 Pfam Zinc finger, C3HC4 type (RING finger) 225 271 IPR018957 GO:0046872
Vifa5g01873 709 ProSitePatterns Zinc finger RING-type signature. 240 249 IPR017907 -
Vifa5g01873 709 MobiDBLite consensus disorder prediction 1 53 - -
Vifa5g01873 709 MobiDBLite consensus disorder prediction 153 175 - -
Vifa5g01873 709 Coils Coil 548 572 - -
Vifa5g01873 709 PANTHER RING FINGER 10 FAMILY MEMBER 67 709 IPR039739 -
Vifa5g01873 709 MobiDBLite consensus disorder prediction 95 140 - -
Vifa5g01873 709 MobiDBLite consensus disorder prediction 70 85 - -
Vifa5g01873 709 MobiDBLite consensus disorder prediction 382 401 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g01873 Vifa-Chr5 545131447 545138518 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g01873 134 646 C3H Transcription Factor Family AT3G26730 55.357 0.0 591
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g01873 K26979 - gmx:100798764 1037.71
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa5g01873 5 545131447 545138518 Vifa5g01873 5 545131447 545138518 ECH