Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g01872 ATGTCCATCTTGCCCTCACAAACCCAATCGGCATCTTCGTCTTCTTCGTCTTTACCAATCCCTAACCCTAATTCACAACATGGAGTTTCAGAAATCGCCTCTTCTCTTTCCCCTCAACTCAACCATGCTCTCGGATCTCTCCAGATCTCCGATTATCCAGGTCCATCAACTCCAGCTGCAGAAGATTCTGGTAGACCCTCCGAAAAGGTGACGGAGCTAGAGTCTTCAAGTGGTATGAAGGCACCTCAGCGAAACTCTAGATCACATTCTAGGAGTCACTCAGGAAGACGTACAGTTGGACTCTCCCAGTCTGAGGGGATGACGACGGGAACAATTTCTTCTCATAGAAATCAACAGGCTACTGGATCTGTATATTCTCAAGGAAGCACTCCTTTCGGAGGAAGGAAATCTCAGATGGCTAATGGCAATCACTTACTCAACTTTCAGTATGATCCAATATCCCGTTCCCAACAAAGGGGTCCTCCTCCTCCCCCTCCAGCACGAAGGCAGCGGAAGAGAAGACCATACAACAAAGATTTGTTTTTGCAGGCAAATTTCAAATTCATGGTGCTAGATTCGGGAAATTATTCCCCCGAGTCAATGGATCCAGATAAAATGTTACAGTGGGAAGATATTATATGTGTGACATATTCGACACCCTCTCCAATTCAGTGTCCAATTTGTCTGGAGCATCCCCTGTGTCCCCAAATAACCTCATGTGGACACATTTTTTGTTTCCCATGTATTTTACAATACTTGATGTTGGGTGAAGAAGATCACAAAGGTGATTGCTGGAAAAGGTGTCCGTTGTGCTTTGTGATGATATCTGTCAAGGACTTATATACAGTCCACATCACAAATGTCAAACAGTATCAAGTAGGAGATAATATTGAGTTCACTTTCTTAACAAGGAAGAAGGATTCATTTACTCTTTCGCATAAAAATAAACCAGAGACTGATAACTCATCATGTGGCCAAGGAGATGTATGTGATCCCTTTTCTAAGCTCACACTCACATTAGATGTAGATCTCTCAGCGAGACATGCAATATCAGACCTAGATGGTTGGCTGGCCAAAGCTGATTCAGGTCTTGTCGACGACCTCGAGAAGCTTCCATATGTACCATCAATATCTGCAAATGCTGTGGATACTGATGATGAAAACTGTTCTAATGGATCAAGAACTTCCTCTACTGATTTCCCCGATCAAAGCAAGGTTGTAATATTGGATAAATCAACTGCTGGTGGCTGTCAGGATGAAACTTTGGACCCGGAAAAAAAACTAATAGAGCAGGAAATGAATTTGTCTTCTTCGTATGAGGAGAAAAAATGTATTCAAGGCCATTCAAATGGCATTGCAGACGCAAAGGAAAATGACTCTTACAATTTTTATCAGGCGGCTGATGGGCAACATCTAATTCTTCATCCTTTGAACACCAAGTGTTTACTGCATCATTATGGTAGCTATGATAAGCTCCCTCACAGAATAAGTGGAAGGATTCTACAATTGGAGACAGTTACTCAATCTGAGGCTATGAGGAGGCGGTATCGATTTTTAAGTCATTTTCCATTAACCACAACTTTTCAGCTCTGTGAAGTTGATTTGAGTGAGATGTTGCCTGCTGAAGCACTGGCCCCATTTTTGGATGAAATAAAGAACCGTGCAAACCAGAGGAAGCAACTCGCAAAGAAGGAACTGAAGGAAAAATTAAAGGCTGAAGCTACTTCTAATTATGCTCTTTCCATGTCAACCCATTATCAGTTTATTTCTCGTGATGATCCTCCCACGTTCTCCATGGACGACTTTGAAGCTCTAGGAAATTCCGCTCTGTCATCAAGTCCACCCGTTGTCGGTGAGAGGAAATTGTTCTCAAGTGTGACTAGGCTTGGTTTTGCTGCTGCTCATGATTCTCCATCCTTTCAAGCTCAAGAAACTAGCAATCTACACAATAACAATTCGATTGCTGATTCTTCTGGTACAGCAGGTTTGAGGAACGGGGAGATACTATCATACTCCAATGTCATATCTAAAGCAGAATCTAATGGAAGTTCGAATGCACCAAAGACAAATGACACAGGAAAGAAGGGAAAGAAACCAAATCGAGTTCTTCTGTCAACAGCTGGTGGCAGGCGTTATTGA 2139 0.425 MSILPSQTQSASSSSSSLPIPNPNSQHGVSEIASSLSPQLNHALGSLQISDYPGPSTPAAEDSGRPSEKVTELESSSGMKAPQRNSRSHSRSHSGRRTVGLSQSEGMTTGTISSHRNQQATGSVYSQGSTPFGGRKSQMANGNHLLNFQYDPISRSQQRGPPPPPPARRQRKRRPYNKDLFLQANFKFMVLDSGNYSPESMDPDKMLQWEDIICVTYSTPSPIQCPICLEHPLCPQITSCGHIFCFPCILQYLMLGEEDHKGDCWKRCPLCFVMISVKDLYTVHITNVKQYQVGDNIEFTFLTRKKDSFTLSHKNKPETDNSSCGQGDVCDPFSKLTLTLDVDLSARHAISDLDGWLAKADSGLVDDLEKLPYVPSISANAVDTDDENCSNGSRTSSTDFPDQSKVVILDKSTAGGCQDETLDPEKKLIEQEMNLSSSYEEKKCIQGHSNGIADAKENDSYNFYQAADGQHLILHPLNTKCLLHHYGSYDKLPHRISGRILQLETVTQSEAMRRRYRFLSHFPLTTTFQLCEVDLSEMLPAEALAPFLDEIKNRANQRKQLAKKELKEKLKAEATSNYALSMSTHYQFISRDDPPTFSMDDFEALGNSALSSSPPVVGERKLFSSVTRLGFAAAHDSPSFQAQETSNLHNNNSIADSSGTAGLRNGEILSYSNVISKAESNGSSNAPKTNDTGKKGKKPNRVLLSTAGGRRY 712
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g01872 712 ProSiteProfiles Zinc finger RING-type profile. 225 271 IPR001841 -
Vifa5g01872 712 SMART ring_2 225 271 IPR001841 -
Vifa5g01872 712 FunFam RING finger protein 10 218 286 - -
Vifa5g01872 712 PANTHER RING FINGER 10 FAMILY MEMBER 67 712 IPR039739 -
Vifa5g01872 712 SUPERFAMILY RING/U-box 224 278 - -
Vifa5g01872 712 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 215 322 IPR013083 -
Vifa5g01872 712 CDD RING-HC_RNF10 223 280 - -
Vifa5g01872 712 MobiDBLite consensus disorder prediction 1 140 - -
Vifa5g01872 712 Pfam Zinc finger, C3HC4 type (RING finger) 225 271 IPR018957 GO:0046872
Vifa5g01872 712 ProSitePatterns Zinc finger RING-type signature. 240 249 IPR017907 -
Vifa5g01872 712 MobiDBLite consensus disorder prediction 677 712 - -
Vifa5g01872 712 MobiDBLite consensus disorder prediction 1 53 - -
Vifa5g01872 712 MobiDBLite consensus disorder prediction 153 175 - -
Vifa5g01872 712 Coils Coil 548 572 - -
Vifa5g01872 712 MobiDBLite consensus disorder prediction 95 140 - -
Vifa5g01872 712 MobiDBLite consensus disorder prediction 70 85 - -
Vifa5g01872 712 MobiDBLite consensus disorder prediction 382 401 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g01872 Vifa-Chr5 545131447 545138518 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g01872 134 646 C3H Transcription Factor Family AT3G26730 55.357 0.0 592
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g01872 K26979 - gmx:100798764 1042.34