Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g01862 ATGGAACGTTACACGCTACCTTTACCACAAGGACTTCACAACACTCTTACTATACCTTGGACTGAACCACAACAAGAACAACATCAACAACAACAACAACAACAATCACCTTCATGGTCCACACCTAACTCCGAACCTAAACTCAACACCGACCAAGATATTGCCATTGCTATTGCCATGGCTGGTGCTGCTACTACTACCTCTCTCCCTTTCTTCAAACCCGAACCTGATAACTTCTACAACCTCAACTCTACTACAACAAACAATAACAACAACAACAACAACGTTGTTTCATTTGTTTCAAATCCCAATTCTACTAATGATAATTTTCTCATGCACCAAAACACAAACACCTTGGATTCAATTTCAATTTCGAATCCACACTCTTTTTTCCATAACACCAACAACTACTTCTTCAACAATACCAACAACAATAACAATAACCCTTTTGAAATGGGATTCGAAAATGGATTCTTTATGGGAAACAACAACAACAACAACAACGTTTCGAATTCACCCGTTTTTATGGGTGGGTCCCTCGACCTGAGTTCCGCTTCCGAGTTTCCACCGAGTCTTGAACTCGATGCTTCTGTAGCACCTTTCAGTGCTTCGTTTTCTATGCCTCTTGACCTGTCTCAACCGCAAACTCAACAGCAGCAGCAGCAGCAGCAACAACAGCCGACTACGCTGTTTCAAAAGCGGAGAGGGGCGTTGGAGATTCCGAGGTTGGAGACGGTGGGGAACAAGAAGAAGAGGAAAGTGGAGAAGAAGTGGGAAGAAGATGGAAATGGTGGTGGTGAGGATGATGTTGAGGATTTTTCTGAGTTGAATTATGATTCTGATGAGAATGGAAATGATTTGAACAATTCCAATGGGACTGTTGTTACTGGTGGAGATCAGAAGGGGAAGAAGAAGAAGGGGCTTCCGGCGAAAAATCTCATGGCGGAGAGGCGGAGGAGGAAGAAACTCAATGATAGGTTGTACATGCTTAGGTCTGTTGTGCCAAAGATTAGCAAGATGGATAGGGCTTCAATACTTGGTGATGCCGTTGACTACTTGAAGGAGCTACTGCAGCGGATTAATAATCTTCATAACGAACTGGAATCAACTCCTCCTGGATCATTGATGCAACCTTCTGCAAGTGCAAGCTTTCACCCGTTGACACCCACTCCGCCAACTCTTCCTTGCCGAGTCAAGGAAGATCTATATCCTGCTGACTTGCTAAGCCCCAAAAACCAATCTCCTAAGGTGGAAGTTAGGGTAAGGGAAGGGAGAGCTGTCAACATTCATATGTTTTGTACCCGAAGACCTGGACTTTTGCTTTCTACCATGAGGGCTTTGGATAACCTGGGATTGGATGTTCAACAAGCTGTTATCAGTTGTTTCAATGGCTTTGCTTTGGATGTGTTCAGAGCCGAGCAGCAATGCAGAGAAGGTCAGGACGTTCTCCCCGAGCAAATTAAAGCAGTACTTTTGGATTCGGCTGGATATCATGATGCATTGCTTCTTGTTCTCCGAGTTAGTAAAAGCCCGTGTCTTCAGGCCAAGATCAAATAG 1557 0.4412 MERYTLPLPQGLHNTLTIPWTEPQQEQHQQQQQQQSPSWSTPNSEPKLNTDQDIAIAIAMAGAATTTSLPFFKPEPDNFYNLNSTTTNNNNNNNNVVSFVSNPNSTNDNFLMHQNTNTLDSISISNPHSFFHNTNNYFFNNTNNNNNNPFEMGFENGFFMGNNNNNNNVSNSPVFMGGSLDLSSASEFPPSLELDASVAPFSASFSMPLDLSQPQTQQQQQQQQQQPTTLFQKRRGALEIPRLETVGNKKKRKVEKKWEEDGNGGGEDDVEDFSELNYDSDENGNDLNNSNGTVVTGGDQKGKKKKGLPAKNLMAERRRRKKLNDRLYMLRSVVPKISKMDRASILGDAVDYLKELLQRINNLHNELESTPPGSLMQPSASASFHPLTPTPPTLPCRVKEDLYPADLLSPKNQSPKVEVRVREGRAVNIHMFCTRRPGLLLSTMRALDNLGLDVQQAVISCFNGFALDVFRAEQQCREGQDVLPEQIKAVLLDSAGYHDALLLVLRVSKSPCLQAKIK 518
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g01862 518 MobiDBLite consensus disorder prediction 206 232 - -
Vifa5g01862 518 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 307 356 IPR011598 GO:0046983
Vifa5g01862 518 MobiDBLite consensus disorder prediction 264 279 - -
Vifa5g01862 518 FunFam BHLH transcription factor 303 371 - -
Vifa5g01862 518 CDD ACT_UUR-ACR-like 429 490 - -
Vifa5g01862 518 MobiDBLite consensus disorder prediction 23 48 - -
Vifa5g01862 518 MobiDBLite consensus disorder prediction 237 263 - -
Vifa5g01862 518 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 310 376 IPR036638 GO:0046983
Vifa5g01862 518 Coils Coil 350 370 - -
Vifa5g01862 518 SMART finulus 313 362 IPR011598 GO:0046983
Vifa5g01862 518 Pfam Helix-loop-helix DNA-binding domain 314 356 IPR011598 GO:0046983
Vifa5g01862 518 Gene3D - 299 370 IPR036638 GO:0046983
Vifa5g01862 518 MobiDBLite consensus disorder prediction 206 310 - -
Vifa5g01862 518 CDD bHLH_AtAMS_like 310 376 - -
Vifa5g01862 518 MobiDBLite consensus disorder prediction 280 297 - -
Vifa5g01862 518 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 212 497 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g01862 Vifa-Chr5 544377546 544379909 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g01862 99 473 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G26744 50.476 3.35e-102 313
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vifa5g01862 HLH 1.3e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g01862 - - psat:127126761 700.279