Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g01859 ATGGCTCCGTCATCTGAAACTTCCGTCCGCAAGAACATGATTCCTTCATTTCTCTACGGTTCCTCCCCTAAAACCCTACCGGTTATTCACCAGATCATCAACTCCGGCCCCGCTCCTTCCGCCGCCGCGTCGCCTTCTTTGACCGGAACTGGATCTTTCATGATTCCTTCTCCTAAGGAATCCGGTAAGATCGAGATGTACTCGCCGGCTTTCTATGCTGCCTGTACCGCTGGTGGAATTCTGAGCTGTGGTCTTACTCACATGACCGTCACTCCTCTTGACTTAGTCAAGTGTAATATGCAGATTGATCCTACCAAGTACAAGAGCATCTCATCAGGGTTTGGAGTTTTGCTCAAGGAGCAGGGAGTTAAGGGCTTTTTCCGTGGCTGGGTGCCTACCTTGCTTGGTTACAGTGCACAGGGTGCTTGCAAATTTGGATTCTATGAGTTCTTTAAGAAGTACTATTCTGATATTGCTGGTCCAGAGTATGCAAACAAGTACAAGACCTTGATCTACCTTGCTGGTTCAGCTTCTGCTGAGGTCATTGCCGATGTTGCACTTTGCCCATTTGAAGCTGTGAAAGTACGTGTTCAAACTCAGCCTGGTTTTGCTAGAGGTCTTGGTGATGGGCTCCCAAAATTTGTCAAATCTGAAGGAGTTTTGGGGTTGTACAAGGGATTAGTGCCTCTATGGGGACGACAAATTCCATACACAATGATGAAATTTGCTTCTTTTGAAACCATTGTTGAGCAAATCTATAAACATGCCATCCCCAGGCCAAAGAGCGAGTGCAGCAAATCTCTGCAACTTGGTGTCAGTTTTGCTGGTGGATATGTTGCTGGTGTACTTTGTGCAATTGTGTCTCATCCTGCTGATAACCTTGTATCTTTTCTGAACAACGCTAAAGGTGCCACAGTTGGTGATGCTGTTAAGAAGTTTGGTGTTGTGGGTCTTTTCACCCGAGGTCTCCCTCTCCGTATCGTTATGATTGGAACACTTACAGGAGCCCAGTGGGGAATATATGATGCTTTCAAAGTCTTTGTGGGGCTGCCAACAACTGGTGGTGCAGCTCCTCCTGCTGAGATCGTAAAGGCATAA 1098 0.469 MAPSSETSVRKNMIPSFLYGSSPKTLPVIHQIINSGPAPSAAASPSLTGTGSFMIPSPKESGKIEMYSPAFYAACTAGGILSCGLTHMTVTPLDLVKCNMQIDPTKYKSISSGFGVLLKEQGVKGFFRGWVPTLLGYSAQGACKFGFYEFFKKYYSDIAGPEYANKYKTLIYLAGSASAEVIADVALCPFEAVKVRVQTQPGFARGLGDGLPKFVKSEGVLGLYKGLVPLWGRQIPYTMMKFASFETIVEQIYKHAIPRPKSECSKSLQLGVSFAGGYVAGVLCAIVSHPADNLVSFLNNAKGATVGDAVKKFGVVGLFTRGLPLRIVMIGTLTGAQWGIYDAFKVFVGLPTTGGAAPPAEIVKA 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g01859 365 ProSiteProfiles Solute carrier (Solcar) repeat profile. 167 251 IPR018108 -
Vifa5g01859 365 ProSiteProfiles Solute carrier (Solcar) repeat profile. 70 154 IPR018108 -
Vifa5g01859 365 Pfam Mitochondrial carrier protein 73 156 IPR018108 -
Vifa5g01859 365 Pfam Mitochondrial carrier protein 169 255 IPR018108 -
Vifa5g01859 365 PANTHER SOLUTE CARRIER FAMILY 25 (MITOCHONDRIAL CARRIER PHOSPHATE CARRIER), MEMBER 3, LIKE-RELATED-RELATED 50 358 IPR044677 GO:0005315|GO:1990547
Vifa5g01859 365 Gene3D Mitochondrial carrier domain 70 348 IPR023395 -
Vifa5g01859 365 FunFam Phosphate carrier protein, mitochondrial 70 348 - -
Vifa5g01859 365 ProSiteProfiles Solute carrier (Solcar) repeat profile. 268 347 IPR018108 -
Vifa5g01859 365 SUPERFAMILY Mitochondrial carrier 73 343 IPR023395 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g01859 Vifa-Chr5 543896331 543899173 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g01859 8 362 Chloroplast and Mitochondria Gene Families AT5G14040 79.292 0.0 575
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g01859 K15102 - gmx:548006 608.601
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa5g01859 5 543896331 543899173 Vifa5g01859 5 543896331 543899173 ECH
Vifa5g01859 5 543896331 543899173 Vifa1g04957 1 773219757 773221491 PCT