Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g01858 ATGGCAAACAGGTACTGGGTGGTGTCTCTTCCCGTCCAGAACAACAGCTCTTCCTCCACAATATGGAACCAATTGCAGCAAAATATCTCTAAGCATTCCTTCGACACTCCTCTTTACAGATTCAACATTCCCAATCTCCGCGTCGGAACCCTAGATTCACTCCTCTCCCTCAGCGATGATCTCAACAAGTCTAATGCTTTCATGGAGGGTGTTTCTATCAAGATCAGGCGTCAGATTGAGGAACTCGAGAGAGTCTCTGGCGTTAATACTGCTGGGCTTACCGTCGATGGAGTTCCTGTTGATTCCTATTTGACTAGATTTGTTTGGGATGATGCTAAGTACCCGACTATGTCGCCTCTGAAGGAGATCGTGGATGGCATTCATGCTCAAGTTGCAAAGATTGAGGATGATCTCAAGGTTCGTGTTTCCGAGTATAATAATATCCGAAGTCAGCTCAATGCTATAAACCGAAAGCAAACTGGAAGCTTAGCAGTCCGTGATCTTTCTAACTTGGTAAAACCTGAGGACATTATAAATTCAGAACATTTAACTACCCTCCTTGCCGTTGTTTCCAAGTATTCACAGAAGGATTGGCTCGCAAGCTACGAAACATTGACTAGCTATGTGGTCCCAAGGTCTTCTAAGAAGTTGCATGAGGATAACGAATATGCTCTTTATACCGTAACCCTCTTCAATCGTGTGGCAGACAATTTTAGAACTAGTGCACGTGAAAAAGGGTTCCAAATTCGTGATTTTGAATACAGTCCAGAAACACATGAGGGCCGAAAGCAGGAGTTGGATAAATTGATGCAAGATCAAGAAAGTTTGAGGGGTTCTCTGTTGCAATGGTGCTATACCAGTTATGGAGAGGTTTTCAGCTCTTGGATGCACTTCTGTGCTGTCCGCTTATTTTCTGAAAGCATTCTGAGATATGGATTGCCGCCAAATTTCTTGGCATGTGTCCTAGCTCCATCTGTAAAAGCTGAGAAGAAAGTACGATCAATCCTTGAAGGGTTGAGTGATAGCTCAAACAGTGCATACTGGAAAACTGATGAAGAGGTAGGGGCTGGAATGGCTAACCTAGCAGGTGAGGCGGATACACACCCATACGTTTCCTTCACAATCAACCTTCTCTGA 1137 0.4415 MANRYWVVSLPVQNNSSSSTIWNQLQQNISKHSFDTPLYRFNIPNLRVGTLDSLLSLSDDLNKSNAFMEGVSIKIRRQIEELERVSGVNTAGLTVDGVPVDSYLTRFVWDDAKYPTMSPLKEIVDGIHAQVAKIEDDLKVRVSEYNNIRSQLNAINRKQTGSLAVRDLSNLVKPEDIINSEHLTTLLAVVSKYSQKDWLASYETLTSYVVPRSSKKLHEDNEYALYTVTLFNRVADNFRTSAREKGFQIRDFEYSPETHEGRKQELDKLMQDQESLRGSLLQWCYTSYGEVFSSWMHFCAVRLFSESILRYGLPPNFLACVLAPSVKAEKKVRSILEGLSDSSNSAYWKTDEEVGAGMANLAGEADTHPYVSFTINLL 378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g01858 378 Gene3D - 165 253 - -
Vifa5g01858 378 Pfam V-ATPase subunit C 5 371 IPR004907 GO:0033180|GO:0046961|GO:1902600
Vifa5g01858 378 FunFam V-type proton ATPase subunit C 165 253 - -
Vifa5g01858 378 SUPERFAMILY Vacuolar ATP synthase subunit C 1 377 IPR036132 GO:0015078|GO:0033180|GO:1902600
Vifa5g01858 378 CDD V-ATPase_C 5 375 IPR004907 GO:0033180|GO:0046961|GO:1902600
Vifa5g01858 378 PANTHER V-TYPE PROTON ATPASE SUBUNIT C 1 377 IPR004907 GO:0033180|GO:0046961|GO:1902600
Vifa5g01858 378 Gene3D Vacuolar atp synthase subunit c; domain 1 5 336 - -
Vifa5g01858 378 Gene3D - 43 314 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g01858 Vifa-Chr5 543875595 543882345 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g01858 1 377 Primary Pumps ATPases(2) AT1G12840 81.167 0.0 640
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g01858 K02148 - gmx:100813963 664.07
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa5g01858 5 543875595 543882345 Vifa5g01858 5 543875595 543882345 ECH