Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g01857 ATGGCAAACAGGTACTGGGTGGTGTCTCTTCCCGTCCAGAACAACAGCTCTTCCTCCACAATATGGAACCAATTGCAGCAAAATATCTCTAAGCATTCCTTCGACACTCCTCTTTACAGATTCAACATTCCCAATCTCCGCGTCGGAACCCTAGATTCACTCCTCTCCCTCAGCGATGATCTCAACAAGTCTAATGCTTTCATGGAGGGTGTTTCTATCAAGATCAGGCGTCAGATTGAGGAACTCGAGAGAGTCTCTGGCGTTAATACTGCTGGGCTTACCGTCGATGGAGTTCCTGTTGATTCCTATTTGACTAGATTTGTTTGGGATGATGCTAAGTACCCGACTATGTCGCCTCTGAAGGAGATCGTGGATGGCATTCATGCTCAAGTTGCAAAGATTGAGGATGATCTCAAGGTTCGTGTTTCCGAGTATAATAATATCCGAAGTCAGCTCAATGCTATAAACCGAAAGCAAACTGGAAGCTTAGCAGTCCGTGATCTTTCTAACTTGGTAAAACCTGAGGACATTATAAATTCAGAACATTTAACTACCCTCCTTGCCGTTGTTTCCAAGTATTCACAGAAGGATTGGCTCGCAAGCTACGAAACATTGACTAGCTATGTGGTCCCAAGGTCTTCTAAGAAGTTGCATGAGGATAACGAATATGCTCTTTATACCGTAACCCTCTTCAATCGTGTGGCAGACAATTTTAGAACTAGTGCACGTGAAAAAGGGTTCCAAATTCGTGATTTTGAATACAGTCCAGAAACACATGAGGGCCGAAAGCAGGAGTTGGATAAATTGATGCAAGATCAAGAAAGTTTGAGGGGTTCTCTGTTGCAATGGTGCTATACCAGTTATGGAGAGGTTTTCAGCTCTTGGATGCACTTCTGTGCTGTCCGCTTATTTTCTGAAAGCATTCTGAGATATGGATTGCCGCCAAATTTCTTGGTATTTTACTCTTTTAGAACCGAAGCATGTGTCCTAGCTCCATCTGTAAAAGCTGAGAAGAAAGTACGATCAATCCTTGAAGGGTTGAGTGATAGCTCAAACAGTGCATACTGGAAAACTGATGAAGAGGTAGGGGCTGGAATGGCTAACCTAGCAGGTGAGGCGGATACACACCCATACGTTTCCTTCACAATCAACCTTCTCTGA 1161 0.4384 MANRYWVVSLPVQNNSSSSTIWNQLQQNISKHSFDTPLYRFNIPNLRVGTLDSLLSLSDDLNKSNAFMEGVSIKIRRQIEELERVSGVNTAGLTVDGVPVDSYLTRFVWDDAKYPTMSPLKEIVDGIHAQVAKIEDDLKVRVSEYNNIRSQLNAINRKQTGSLAVRDLSNLVKPEDIINSEHLTTLLAVVSKYSQKDWLASYETLTSYVVPRSSKKLHEDNEYALYTVTLFNRVADNFRTSAREKGFQIRDFEYSPETHEGRKQELDKLMQDQESLRGSLLQWCYTSYGEVFSSWMHFCAVRLFSESILRYGLPPNFLVFYSFRTEACVLAPSVKAEKKVRSILEGLSDSSNSAYWKTDEEVGAGMANLAGEADTHPYVSFTINLL 386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g01857 386 FunFam V-type proton ATPase subunit C 165 253 - -
Vifa5g01857 386 SUPERFAMILY Vacuolar ATP synthase subunit C 1 385 IPR036132 GO:0015078|GO:0033180|GO:1902600
Vifa5g01857 386 CDD V-ATPase_C 5 383 IPR004907 GO:0033180|GO:0046961|GO:1902600
Vifa5g01857 386 PANTHER V-TYPE PROTON ATPASE SUBUNIT C 1 385 IPR004907 GO:0033180|GO:0046961|GO:1902600
Vifa5g01857 386 Pfam V-ATPase subunit C 5 379 IPR004907 GO:0033180|GO:0046961|GO:1902600
Vifa5g01857 386 Gene3D - 43 314 - -
Vifa5g01857 386 Gene3D - 165 253 - -
Vifa5g01857 386 Gene3D Vacuolar atp synthase subunit c; domain 1 5 319 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g01857 Vifa-Chr5 543875595 543882345 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g01857 1 385 Primary Pumps ATPases(2) AT1G12840 79.481 0.0 633
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g01857 K02148 - gmx:100813963 656.751