Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g01856 ATGATGATGAACGAGGTTGAAGGCAAGAAAGTTGTGGTTCAGAATACCAAGGCGTGTGCTTTCATGGCAAGTGTTGAGCCTCGTCAAGTTGAGAGGAAGAGGATGGCTAGACAGAGAAGATCCTCATCTTCTTCTTCTTCCATCACCAGAACTCATCCATCAAACCCTCCTCCTCCTCCTCCTACTGCTTCTTCAACTACCATCTCCAAAGTGCCACTTCCTCCAATTCCTCCTCTTTTTACTAAACCACCTTCCAAACAAGTTGCGATTGATCCAAAGAGGTTGAGCTTCCTTTTCCAAAAGGAGCTGAAGAACAGTGATGTTAGCTCCCTTAGGAGAATGGTCTTGCCAAAGAAAGCAGCTGAGGCTTTCCTTCCTGCCCTTGACTCAAAGGAAGGAATTCTGATCAACATGGATGATATCGATGGTATTCATGTATGGTGCTTCAAGTACAGGTACTGGCCAAACAACAATAGTAGGATGTATGTTCTTGAAAACACTGGAGACTTTGTTAATGCGCATTGTTTACGCAATGGAGATACCATTGTGGTTTACCAGGATAATGAGAGTCACAACTATGTAATTGAGGCGAAAAAGGCTCTTGGGCGTGATGGAGATAAGTTTATGGAAGGTACTGATACAACCAACAATAGTATCTTTCCTAATGATTTCGAGTTGAACACGAATTTCTTCGATATAACCTACCCAGAAGTGACTCATCCCTTTCCTGAATTTAATGATACCTTGAATGATGTCATGAATGACAATGGAATGTCGTTTATATATGACACAACAATCTCAAATGACTCACCATTTGATTTTATGAGTGGATCGATGACAAATTACTCGAAGATGGGATCTTTTGAAACCTTTGGCTCAGTTGAGAACCTCTCACTTGATGACTTCTACTGA 912 0.4156 MMMNEVEGKKVVVQNTKACAFMASVEPRQVERKRMARQRRSSSSSSSITRTHPSNPPPPPPTASSTTISKVPLPPIPPLFTKPPSKQVAIDPKRLSFLFQKELKNSDVSSLRRMVLPKKAAEAFLPALDSKEGILINMDDIDGIHVWCFKYRYWPNNNSRMYVLENTGDFVNAHCLRNGDTIVVYQDNESHNYVIEAKKALGRDGDKFMEGTDTTNNSIFPNDFELNTNFFDITYPEVTHPFPEFNDTLNDVMNDNGMSFIYDTTISNDSPFDFMSGSMTNYSKMGSFETFGSVENLSLDDFY 303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g01856 303 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 23 205 IPR044800 GO:0003700
Vifa5g01856 303 Gene3D - 95 210 IPR015300 -
Vifa5g01856 303 ProSiteProfiles B3 DNA-binding domain profile. 99 201 IPR003340 GO:0003677
Vifa5g01856 303 MobiDBLite consensus disorder prediction 26 85 - -
Vifa5g01856 303 CDD B3_DNA 97 199 IPR003340 GO:0003677
Vifa5g01856 303 Pfam B3 DNA binding domain 99 195 IPR003340 GO:0003677
Vifa5g01856 303 SUPERFAMILY DNA-binding pseudobarrel domain 98 195 IPR015300 -
Vifa5g01856 303 MobiDBLite consensus disorder prediction 52 82 - -
Vifa5g01856 303 SMART B3_2 99 201 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g01856 Vifa-Chr5 542527713 542530718 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g01856 31 303 B3 DNA Binding Superfamily AT3G26790 52.055 4.97e-79 241
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Vifa5g01856 B3 1.3e-16 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g01856 K09287 - psat:127126769 434.106
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa5g01856 5 542527713 542530718 Vifa5g01856 5 542527713 542530718 ECH