Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g01846 ATGTCGTTTCCTTGTGACTACTGCGACACAAGAAGCGCGGTTCTATATTGCAAACCAGACTCCGCGAAACTCTGCTTAGTTTGCGACCAGCACGTGCACTCTGCCAACGCACTCGCGCTCAAGCACGTGCGTTTTCAGATTTGTCAAAACTGTAAAAACGACGCCGCTTCCGTTCGGTGCTTCACCGATAACCTAGTTCAATGTCTCCGCTGCGATTGGGACGCTCACGGCGGTCACTCCTCCTCTTCGCATCACCACAACCACAACCGCCACCGTCTGGAAGGTCTCACCGGATGTCCTTCCGTTCAGGAAATTGTCATTGCTTTAGGGCTTGATTTGAAGCCGAACGACGCCGTGTTTGTCGCGGATTTGGAAGGTCCGGTTGTTCCGGTTATTCAGAATAGAGATGAGTTGTATGAACAAGTGGCGGAAGTTGCAAAGAGGAAGAGGAATTTGGAAGGTGAAAATGATTGTAGATTCAGTGATTGTAGTAATGAAGTTGATGATTTTTTGTTGCTTCAGCAAACTCCGTTTACTTCTTTGCTTAATTTTTCATCTGAATTTGATTTCGGTGATAAGAAAAGTAATAATGATTGTGGAAATGAATCTGGTGTTCTTCTCTGGAATCGGAACCCTACTTATCAGCCTCCTCAGGTCTGGGATTTTCAATTACAGAAATCAAGAGATATGACATATGATGGTGTAGAAGTAGCTTCCTTATCAGTTCCAAAATCATTGCAGGATGTGCATAATAAGAATTACTCAACACTTGGTGATGATTTTCTATCAAGAAATAATCATTCGGATCAGTCATCATCAAGTCATGTGAAGAAGAAAGTCGAAAGCAACAAGAAAACTAGAGACGGGTTTCCGACTGAGTCCAAATTAGTTGAATCCATAACATACAGCGGTGCAGACAATGTACCAGTTATGGAGTATCTTTTGAGTGGGAGTGAAAATGTTAGCAACATAAATGGCAAGGTTAGCTTGGAAGAACAAGTAAGGAATAGAGGGGATGCCATGTTACGCTATAAGGAGAAGAAGAAAACTCGAAGGTTTGACAAGCACATTCGATATGAATCAAGGAAGGCTAGGGCTGATACGAGGAAGAGAGTGAGAGGGAGATTTGTTAAGGCAGGTGATGATGACGACATTCAAGAAGGATGA 1167 0.4327 MSFPCDYCDTRSAVLYCKPDSAKLCLVCDQHVHSANALALKHVRFQICQNCKNDAASVRCFTDNLVQCLRCDWDAHGGHSSSSHHHNHNRHRLEGLTGCPSVQEIVIALGLDLKPNDAVFVADLEGPVVPVIQNRDELYEQVAEVAKRKRNLEGENDCRFSDCSNEVDDFLLLQQTPFTSLLNFSSEFDFGDKKSNNDCGNESGVLLWNRNPTYQPPQVWDFQLQKSRDMTYDGVEVASLSVPKSLQDVHNKNYSTLGDDFLSRNNHSDQSSSSHVKKKVESNKKTRDGFPTESKLVESITYSGADNVPVMEYLLSGSENVSNINGKVSLEEQVRNRGDAMLRYKEKKKTRRFDKHIRYESRKARADTRKRVRGRFVKAGDDDDIQEG 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g01846 388 Coils Coil 135 155 - -
Vifa5g01846 388 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Vifa5g01846 388 MobiDBLite consensus disorder prediction 257 290 - -
Vifa5g01846 388 Pfam CCT motif 337 379 IPR010402 GO:0005515
Vifa5g01846 388 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 4 381 - -
Vifa5g01846 388 ProSiteProfiles CCT domain profile. 337 379 IPR010402 GO:0005515
Vifa5g01846 388 CDD Bbox1_BBX-like 4 47 - -
Vifa5g01846 388 SMART bboxneu5 4 47 IPR000315 GO:0008270
Vifa5g01846 388 MobiDBLite consensus disorder prediction 271 290 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g01846 Vifa-Chr5 539572145 539574561 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g01846 5 381 C2C2-CO-like Transcription Factor Family AT2G33500 36.321 2.18e-66 214
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Vifa5g01846 CCT 1.9e-16 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g01846 - - aprc:113862926 441.039
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa5g01846 5 539572145 539574561 Vifa5g01846 5 539572145 539574561 ECH