Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vifa5g01844 | ATGGGTCGTTGCCCATGTTTTGGGTCTAGAAAGAAGGAAAAAGAGAAAAACCTTAATGGTCGTGAAGATGAAGAGGATGATGTCAACAACCTTAAATCCGTTGGGAATGCATCCGTTTCTGGAAGATCTTTAGAACCGAAATCAGAAGCTACTCCAGCGGAGAATATCGATGGTTCTAATAAGGCTGAAATATTTACCTTCAGAGAGCTTGCGACGGCAACAAAAAATTTTAGGGACGAAACCTTTATTGGACAAGGTGGATTTGGAACTGTTTACAAAGGAAAGCTAGATAAGACTAATCAGATGGTAGCTGTTAAAAGACTTGATACAACTGGTGTCCAAGGGGAGAAAGAATTTTTAGTAGAGGTTCTCATGCTCTCTCTTCTACACCATCCCAACCTTGTTAGTATGATCGGTTATTGCGCGGAGGGCGACCAACGACTTCTTGTGTATGAATATATGCCTTTGGGATCCTTAGAATCTCATCTCCATGATCTTTTTCCTGATAAAGAACCGCTCGACTGGAATACCAGAATGATGATAGCTGCTGGCGCGGCAAGAGGACTAAATTATCTCCACCACGAAGCAAAGCCTACTGTTATATACAGAGATTTGAAATCATCCAACATACTTTTGGATGAAAGATTCAATCCAAAGCTTTCTGATTTCGGACTTGCGAAATTTGGCCCGACTGGAGATCAATCCTACGTTGCCACAAGAGTCATGGGAACACATGGTTATTGTGCACCTGAGTATGCAACTACTGGAAAATTAACAATGAGATCTGACATCTATAGTTTCGGAGTCGTGTTATTGGAGCTAATAACGGGACGTAGAGCGTACGATGATACTCGCGTCCACGACAAGCATCTTGTCGAATGGGCGCGCCCGTTGTTCAGAGAGAGAAGTAATTATCCGAAACTAGCCGATCCACATTTGCAAGGTCACTTCCCGATATCGGGTCTAAGGATGGCTATTGAAATGGCGTGCATGTGTCTTCGAGAAGAGCCACGTCACCGGCCTGGTGCAGGCGATATAGTATTAGCCCTAGATTACTTGTCAGCCAAGCAATATGTTCCAAAAGTATCCGGAACAATTACCATGGGAAGCATGGAGATCGGAGACTCTCCAAAAGAACCAACTATGATTTTGCCGATTTTGCCTAAAGACGCTCTAAGAGAGCAAGCTGTTGCAGAGGCTAAACAATGGGGGGAGACATGGAGAGAAAAGAGAAAACAAAGTTATGAAAATAGTCCTGAGGAAATAAGGACGTGA | 1275 | 0.4337 | MGRCPCFGSRKKEKEKNLNGREDEEDDVNNLKSVGNASVSGRSLEPKSEATPAENIDGSNKAEIFTFRELATATKNFRDETFIGQGGFGTVYKGKLDKTNQMVAVKRLDTTGVQGEKEFLVEVLMLSLLHHPNLVSMIGYCAEGDQRLLVYEYMPLGSLESHLHDLFPDKEPLDWNTRMMIAAGAARGLNYLHHEAKPTVIYRDLKSSNILLDERFNPKLSDFGLAKFGPTGDQSYVATRVMGTHGYCAPEYATTGKLTMRSDIYSFGVVLLELITGRRAYDDTRVHDKHLVEWARPLFRERSNYPKLADPHLQGHFPISGLRMAIEMACMCLREEPRHRPGAGDIVLALDYLSAKQYVPKVSGTITMGSMEIGDSPKEPTMILPILPKDALREQAVAEAKQWGETWREKRKQSYENSPEEIRT | 424 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vifa5g01844 | 424 | Gene3D | Phosphorylase Kinase; domain 1 | 39 | 153 | - | - | |
Vifa5g01844 | 424 | Pfam | Protein kinase domain | 78 | 347 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Vifa5g01844 | 424 | Gene3D | Transferase(Phosphotransferase) domain 1 | 154 | 365 | - | - | |
Vifa5g01844 | 424 | FunFam | probable serine/threonine-protein kinase RLCKVII | 49 | 153 | - | - | |
Vifa5g01844 | 424 | MobiDBLite | consensus disorder prediction | 403 | 424 | - | - | |
Vifa5g01844 | 424 | MobiDBLite | consensus disorder prediction | 31 | 45 | - | - | |
Vifa5g01844 | 424 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 200 | 212 | IPR008271 | GO:0004672|GO:0006468 | |
Vifa5g01844 | 424 | PANTHER | OS07G0668900 PROTEIN | 24 | 359 | - | - | |
Vifa5g01844 | 424 | ProSitePatterns | Protein kinases ATP-binding region signature. | 83 | 106 | IPR017441 | GO:0005524 | |
Vifa5g01844 | 424 | CDD | STKc_IRAK | 83 | 347 | - | - | |
Vifa5g01844 | 424 | MobiDBLite | consensus disorder prediction | 402 | 424 | - | - | |
Vifa5g01844 | 424 | FunFam | Serine/threonine-protein kinase PBS1 | 154 | 367 | - | - | |
Vifa5g01844 | 424 | SUPERFAMILY | Protein kinase-like (PK-like) | 60 | 350 | IPR011009 | - | |
Vifa5g01844 | 424 | ProSiteProfiles | Protein kinase domain profile. | 77 | 353 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Vifa5g01844 | 424 | SMART | serkin_6 | 77 | 353 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Vifa5g01844 | 424 | MobiDBLite | consensus disorder prediction | 1 | 55 | - | - | |
Vifa5g01844 | 424 | MobiDBLite | consensus disorder prediction | 1 | 30 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Vifa5g01844 | Vifa-Chr5 | 539434335 | 539436465 | Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Vifa5g01844 | 62 | 408 | Glycoside Hydrolase | AT3G07070 | 60.511 | 5.60e-146 | 420 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
PK | RLK-Pelle_RLCK-VIIa-1 | Vifa5g01844 | Pkinase | 5.3e-50 | CL0016 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vifa5g01844 | K13430 | - | gmx:100809298 | 585.874 |