Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g01844 ATGGGTCGTTGCCCATGTTTTGGGTCTAGAAAGAAGGAAAAAGAGAAAAACCTTAATGGTCGTGAAGATGAAGAGGATGATGTCAACAACCTTAAATCCGTTGGGAATGCATCCGTTTCTGGAAGATCTTTAGAACCGAAATCAGAAGCTACTCCAGCGGAGAATATCGATGGTTCTAATAAGGCTGAAATATTTACCTTCAGAGAGCTTGCGACGGCAACAAAAAATTTTAGGGACGAAACCTTTATTGGACAAGGTGGATTTGGAACTGTTTACAAAGGAAAGCTAGATAAGACTAATCAGATGGTAGCTGTTAAAAGACTTGATACAACTGGTGTCCAAGGGGAGAAAGAATTTTTAGTAGAGGTTCTCATGCTCTCTCTTCTACACCATCCCAACCTTGTTAGTATGATCGGTTATTGCGCGGAGGGCGACCAACGACTTCTTGTGTATGAATATATGCCTTTGGGATCCTTAGAATCTCATCTCCATGATCTTTTTCCTGATAAAGAACCGCTCGACTGGAATACCAGAATGATGATAGCTGCTGGCGCGGCAAGAGGACTAAATTATCTCCACCACGAAGCAAAGCCTACTGTTATATACAGAGATTTGAAATCATCCAACATACTTTTGGATGAAAGATTCAATCCAAAGCTTTCTGATTTCGGACTTGCGAAATTTGGCCCGACTGGAGATCAATCCTACGTTGCCACAAGAGTCATGGGAACACATGGTTATTGTGCACCTGAGTATGCAACTACTGGAAAATTAACAATGAGATCTGACATCTATAGTTTCGGAGTCGTGTTATTGGAGCTAATAACGGGACGTAGAGCGTACGATGATACTCGCGTCCACGACAAGCATCTTGTCGAATGGGCGCGCCCGTTGTTCAGAGAGAGAAGTAATTATCCGAAACTAGCCGATCCACATTTGCAAGGTCACTTCCCGATATCGGGTCTAAGGATGGCTATTGAAATGGCGTGCATGTGTCTTCGAGAAGAGCCACGTCACCGGCCTGGTGCAGGCGATATAGTATTAGCCCTAGATTACTTGTCAGCCAAGCAATATGTTCCAAAAGTATCCGGAACAATTACCATGGGAAGCATGGAGATCGGAGACTCTCCAAAAGAACCAACTATGATTTTGCCGATTTTGCCTAAAGACGCTCTAAGAGAGCAAGCTGTTGCAGAGGCTAAACAATGGGGGGAGACATGGAGAGAAAAGAGAAAACAAAGTTATGAAAATAGTCCTGAGGAAATAAGGACGTGA 1275 0.4337 MGRCPCFGSRKKEKEKNLNGREDEEDDVNNLKSVGNASVSGRSLEPKSEATPAENIDGSNKAEIFTFRELATATKNFRDETFIGQGGFGTVYKGKLDKTNQMVAVKRLDTTGVQGEKEFLVEVLMLSLLHHPNLVSMIGYCAEGDQRLLVYEYMPLGSLESHLHDLFPDKEPLDWNTRMMIAAGAARGLNYLHHEAKPTVIYRDLKSSNILLDERFNPKLSDFGLAKFGPTGDQSYVATRVMGTHGYCAPEYATTGKLTMRSDIYSFGVVLLELITGRRAYDDTRVHDKHLVEWARPLFRERSNYPKLADPHLQGHFPISGLRMAIEMACMCLREEPRHRPGAGDIVLALDYLSAKQYVPKVSGTITMGSMEIGDSPKEPTMILPILPKDALREQAVAEAKQWGETWREKRKQSYENSPEEIRT 424
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g01844 424 Gene3D Phosphorylase Kinase; domain 1 39 153 - -
Vifa5g01844 424 Pfam Protein kinase domain 78 347 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa5g01844 424 Gene3D Transferase(Phosphotransferase) domain 1 154 365 - -
Vifa5g01844 424 FunFam probable serine/threonine-protein kinase RLCKVII 49 153 - -
Vifa5g01844 424 MobiDBLite consensus disorder prediction 403 424 - -
Vifa5g01844 424 MobiDBLite consensus disorder prediction 31 45 - -
Vifa5g01844 424 ProSitePatterns Serine/Threonine protein kinases active-site signature. 200 212 IPR008271 GO:0004672|GO:0006468
Vifa5g01844 424 PANTHER OS07G0668900 PROTEIN 24 359 - -
Vifa5g01844 424 ProSitePatterns Protein kinases ATP-binding region signature. 83 106 IPR017441 GO:0005524
Vifa5g01844 424 CDD STKc_IRAK 83 347 - -
Vifa5g01844 424 MobiDBLite consensus disorder prediction 402 424 - -
Vifa5g01844 424 FunFam Serine/threonine-protein kinase PBS1 154 367 - -
Vifa5g01844 424 SUPERFAMILY Protein kinase-like (PK-like) 60 350 IPR011009 -
Vifa5g01844 424 ProSiteProfiles Protein kinase domain profile. 77 353 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa5g01844 424 SMART serkin_6 77 353 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa5g01844 424 MobiDBLite consensus disorder prediction 1 55 - -
Vifa5g01844 424 MobiDBLite consensus disorder prediction 1 30 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g01844 Vifa-Chr5 539434335 539436465 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g01844 62 408 Glycoside Hydrolase AT3G07070 60.511 5.60e-146 420
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-1 Vifa5g01844 Pkinase 5.3e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g01844 K13430 - gmx:100809298 585.874