Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g01837 ATGCTTTTGCCTCACAGATTCATATCCAAAGAGTTTTTGGTGATATCCATGGCTGTGAACAGATATGTCGATTATGATTCGATAGATTGTGTTTTTCAATTGCCTGTTGGATACAGGTTTGATCCAACTGATGATATTCTCATGAGCTTTTATTTGAGGAAGAAGATCTATAACCAACATCTTCAATTTCAAGGAATCCTTCAGTTTGATGTGTTCCAAACTGAGCCATGGAGACTACCAATTGATACAAGAAAATCATTAAGTGATAGGAAATACTATTTTTTTGATGTGAGGAACGGTGGGCTTGAAAACATGGACATAAGAGCAGCTGGTAAAGGTGAATGGAGAATTGTAGAAAAAAGGAAAGAAGTTTCTCTCAAAAGTCTTTACTTCATTGGGAGAAAGAACACTTTTGAGTATTGGAAGATGGAAGGAAGAGAACTAGTGAAAAGTGAATGGATGATGGAGGAGTTTCACATCAGTCCAATTCTTGATCCAAACATGAAGTCAAAATTAGGAGCATATCGAGTCATTAAGATGAAGGTGGCAAAGGGCGAGAAGAAAGTTTCTACACCATGTGAGATTGATATAACAATGGAGGGTGAAGATGAATCAGCCAATCCTTCTTCTCCATGA 636 0.3726 MLLPHRFISKEFLVISMAVNRYVDYDSIDCVFQLPVGYRFDPTDDILMSFYLRKKIYNQHLQFQGILQFDVFQTEPWRLPIDTRKSLSDRKYYFFDVRNGGLENMDIRAAGKGEWRIVEKRKEVSLKSLYFIGRKNTFEYWKMEGRELVKSEWMMEEFHISPILDPNMKSKLGAYRVIKMKVAKGEKKVSTPCEIDITMEGEDESANPSSP 211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g01837 211 PANTHER NAC TRANSCRIPTION FACTOR 56 34 180 - -
Vifa5g01837 211 ProSiteProfiles NAC domain profile. 34 180 IPR003441 GO:0003677|GO:0006355
Vifa5g01837 211 SUPERFAMILY NAC domain 31 181 IPR036093 GO:0003677|GO:0006355
Vifa5g01837 211 Pfam No apical meristem (NAM) protein 35 160 IPR003441 GO:0003677|GO:0006355
Vifa5g01837 211 Gene3D NAC domain 43 188 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g01837 Vifa-Chr5 537311368 537312262 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g01837 34 180 NAC Transcription Factor Family AT3G03200 30.065 3.02e-18 80.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vifa5g01837 NAM 6.2e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g01837 - - cam:101501671 194.126