Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g01834 ATGGCAGATCCTTCAACCATTTACGAGTTTCTGAAGCAGCAACAGCAACAACCACCAACTTCATCATCTTCAGCTTCACGACCTAGAAAATCAGCACCACCTCCAACACAAAGAACTTTCCAATGCAACTTCTGTTACCGCAAGTTCTACACTTCTCAAGCTCTTGGTGGTCACCAAAACGCTCACAAACTTGAACGAGCTGCTGCAAGATCAAGAACCATTAACCTCAACAACAACAACAACAACAATAATGTTGTCTCTATCTCATCACCTCAACCGCCACTACCACCTCATTTTTCACTCTTCAATGGATCCAACTCCAAACCCTTGACTGTGTCTGAACAACTTGAACACGGTCATTTCTTTCATCATCCTCATCCTCATCACTCTTATTGGCAACAATTTGAAATGGAGTCGTTACAGTTTCAAACACATCATCCTCATCACCATGTTGCAACAACAACAACAACAACAAACACTCTTCCTATGCTTCATTTCAACCCTTCTGCCGCTTCAACTTCAACTCATTCTCACCATCTTTTCTCCAACAATGCTGCTTCTGCTTCTCCACCTCAACTTGTTGATGCGTCTGACCATGTCAATCTTGACCTCACACTTCACCTGTGA 627 0.429 MADPSTIYEFLKQQQQQPPTSSSSASRPRKSAPPPTQRTFQCNFCYRKFYTSQALGGHQNAHKLERAAARSRTINLNNNNNNNNVVSISSPQPPLPPHFSLFNGSNSKPLTVSEQLEHGHFFHHPHPHHSYWQQFEMESLQFQTHHPHHHVATTTTTTNTLPMLHFNPSAASTSTHSHHLFSNNAASASPPQLVDASDHVNLDLTLHL 208
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g01834 208 ProSiteProfiles Zinc finger C2H2 type domain profile. 40 67 IPR013087 -
Vifa5g01834 208 ProSitePatterns Zinc finger C2H2 type domain signature. 42 62 IPR013087 -
Vifa5g01834 208 Gene3D Classic Zinc Finger 20 92 - -
Vifa5g01834 208 SUPERFAMILY beta-beta-alpha zinc fingers 37 67 IPR036236 -
Vifa5g01834 208 MobiDBLite consensus disorder prediction 169 191 - -
Vifa5g01834 208 MobiDBLite consensus disorder prediction 1 38 - -
Vifa5g01834 208 PANTHER ZINC FINGER PROTEIN JAGGED 11 207 IPR045320 GO:0003700
Vifa5g01834 208 MobiDBLite consensus disorder prediction 169 192 - -
Vifa5g01834 208 MobiDBLite consensus disorder prediction 8 38 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g01834 Vifa-Chr5 536329838 536330464 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g01834 38 103 C2H2 Transcription Factor Family AT5G57520 50.000 5.73e-14 65.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g01834 - - mtr:11440030 146.747