Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g01818 ATGGTTGATCAAATTGAGTCATGTTCGCCTAATACGTTGGTACAATGTCGAATATGTCACGATGAAGATGAAGACTTAAACATGGATACACCTTGTTCTTGTTCTGGTACATTGCAGTATGCTCATAGAATATGTGTGCAAAGATGGTGCAATGAGAAAGGTGATACTACTTGTGAGATTTGCCAACAGCAATTTAAAGGCTACACTGCTCCTCAAGCTCCTTTGTTTCACTATAGTGGCAACTGGGAAATTCCAAGAGTTGGTTTCAATAATCATCAGTTCATAGCATTGTTTCCTGCTAATCATGAATTTCTAGACTTTGATTTTGAATATTCAGCTCCCTCTACAAGGAGCCGCGTGTTCATTCGCATTGTTGCCATCATTTTTATTGTTCTGCTTGTTTTACGGCATACACTTCCAATCATATTTATACTCAATGAAGTAGAAGAGTCTTCTTTGACAGTGATCACGTTGCTAATGTGGGGAATCACTGGATTAATTGTACCCGTGTATATAATGGTAAAAGCTATTCAACAACTTCAAAACCAGGATCATAATCCCCTTATGCAATTGCAAACACACGTTGAAAGAAACATGAGCCAGTCTCAGTTGCGTGTCATCCATATTCAGTGA 633 0.3839 MVDQIESCSPNTLVQCRICHDEDEDLNMDTPCSCSGTLQYAHRICVQRWCNEKGDTTCEICQQQFKGYTAPQAPLFHYSGNWEIPRVGFNNHQFIALFPANHEFLDFDFEYSAPSTRSRVFIRIVAIIFIVLLVLRHTLPIIFILNEVEESSLTVITLLMWGITGLIVPVYIMVKAIQQLQNQDHNPLMQLQTHVERNMSQSQLRVIHIQ 210
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g01818 210 SUPERFAMILY RING/U-box 13 66 - -
Vifa5g01818 210 SMART ringv_2 15 62 IPR011016 GO:0008270
Vifa5g01818 210 CDD RING_CH-C4HC3_MARCH 16 62 - -
Vifa5g01818 210 Pfam Protein of unknown function (DUF3675) 67 177 IPR022143 -
Vifa5g01818 210 PANTHER RING/FYVE/PHD ZINC FINGER DOMAIN-CONTAINING 7 184 IPR033275 -
Vifa5g01818 210 ProSiteProfiles Zinc finger RING-CH-type profile. 8 68 IPR011016 GO:0008270
Vifa5g01818 210 Pfam RING-variant domain 16 61 IPR011016 GO:0008270
Vifa5g01818 210 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 2 73 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g01818 Vifa-Chr5 531374203 531375698 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g01818 15 62 C3H Transcription Factor Family AT2G37950 45.098 3.07e-07 47.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g01818 - - gmx:100806609 255.373