Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g01817 ATGGCCTTACAGAACATTGGTGCTGGCAACAGTGATGATGCCTTCTACAGGTATAAGATGCCTAGAATGATCACGAAAATTGAGGGCAGGGGTAATGGCATCAAGACAAACATTGTCAATATGGTTGATATTGCTAAAGCTTTAGCAAGGCCAGCTGCTTACACAACTAAGTATTTTGGTTGTGAACTTGGTGCACAATCAAAATTCGATGAGAAAACTGGGACTTCTCATGTAAACGGGGCACATGATACCCCAAAACTTGCTGGTCTGCTTGAGAACTTCATTAAGAAATATGTCCAATGTTATGGTTGTGGAAATCCTGAAACTGAGATCTTAATTACTAGGAATCAGATGATCCAGCTGAAATGTGCTGCTTGTGGTTTTGTGTCTGACGTGGATATGAGAGACAAGCTGACTACATTCATCGTTAAGAACCCACCTGAAACAAAGAAAGGTACCAAAGACAAGAAGGCCATGAGGAGAGCTGAAAAGGAGAGACTGAAGGAAGGTGAAGCAGCTGATGAGGAGCTGAAAAAGCTGAAGAAAGAGGTTGTCAAGAAGAAAGTGGCTCCTAAGGAAGGTGCTACAAAATCAAGCTCCTCAAGGAAAAAAGGAAATGGCTCTGATGAAGATCATTCATCTCCTACTCGAAGCCCAACTGATGAGAAGGATGAGGCTGAAGATGAAGATGATGTGCAGTGGCAAACAGACACATCACTGGAGGCTGCTCGGCTACGAAGCCAAGAACAGCTAAGTGCTGTGACAGCTGATATGGTCATGCTCTCAACCAATGAAGCAGAGGAGAAAGCGGCCACTAAGGTAAGTGGCAATCAAGATAATGGCAACTCCATGAAATACAAGACTCTTGTTGCAGAAATCAAAGCTGATTTGAAGAAAGGTGTCAAGGCTAAAGAATTGGTGGCCCACTGGGCAACGCATCCTGTTTCTCCCCAAGAGAAGATGAGTGCTCTGTATGAAGCTCTATTTGGGGACCTTGAGAAAGGGTTTGCAAAAGAAGCAATTAAGAAGAAGAGCTACCTTGCTGCTGCTGTTGCTGAGGAAGAGGGTATGCCATTGCTGCTGCTGCGTGCTATAGAGGAATTTTCCTGCAAGTCCTCCAATGCACTTAAGGAGGTTGCTGTGGTTATTAAGCATCTTTACGATGCTGATGCTTTGGAGGAAGAGCACATATTGCAGTGGTATCAAGAAGGGCTGAAAGGAGACAGTAAGAACTCTCAGATTTGGAAGAATGTTCAGCCTTTCATTGACTGGCTTCAGAGTGCAGAATCAGAGTCGGAGGAAGAATAG 1308 0.4419 MALQNIGAGNSDDAFYRYKMPRMITKIEGRGNGIKTNIVNMVDIAKALARPAAYTTKYFGCELGAQSKFDEKTGTSHVNGAHDTPKLAGLLENFIKKYVQCYGCGNPETEILITRNQMIQLKCAACGFVSDVDMRDKLTTFIVKNPPETKKGTKDKKAMRRAEKERLKEGEAADEELKKLKKEVVKKKVAPKEGATKSSSSRKKGNGSDEDHSSPTRSPTDEKDEAEDEDDVQWQTDTSLEAARLRSQEQLSAVTADMVMLSTNEAEEKAATKVSGNQDNGNSMKYKTLVAEIKADLKKGVKAKELVAHWATHPVSPQEKMSALYEALFGDLEKGFAKEAIKKKSYLAAAVAEEEGMPLLLLRAIEEFSCKSSNALKEVAVVIKHLYDADALEEEHILQWYQEGLKGDSKNSQIWKNVQPFIDWLQSAESESEEE 435
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g01817 435 MobiDBLite consensus disorder prediction 186 222 - -
Vifa5g01817 435 SMART eIF2Bneu4 15 129 IPR002735 GO:0003743|GO:0006413
Vifa5g01817 435 Pfam Domain found in IF2B/IF5 11 127 IPR002735 GO:0003743|GO:0006413
Vifa5g01817 435 Gene3D - 3 104 - -
Vifa5g01817 435 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 434 IPR045196 GO:0003743|GO:0006413
Vifa5g01817 435 FunFam Eukaryotic translation initiation factor 5 1 104 - -
Vifa5g01817 435 Gene3D - 105 145 - -
Vifa5g01817 435 SUPERFAMILY Zinc-binding domain of translation initiation factor 2 beta 98 133 IPR016190 GO:0003743|GO:0006413
Vifa5g01817 435 ProSiteProfiles W2 domain profile. 276 435 IPR003307 GO:0005515
Vifa5g01817 435 MobiDBLite consensus disorder prediction 148 174 - -
Vifa5g01817 435 Pfam eIF4-gamma/eIF5/eIF2-epsilon 361 435 IPR003307 GO:0005515
Vifa5g01817 435 CDD W2_eIF5 319 428 - -
Vifa5g01817 435 MobiDBLite consensus disorder prediction 145 174 - -
Vifa5g01817 435 MobiDBLite consensus disorder prediction 186 233 - -
Vifa5g01817 435 FunFam Eukaryotic translation initiation factor 5 105 145 - -
Vifa5g01817 435 SUPERFAMILY Translation initiation factor 2 beta, aIF2beta, N-terminal domain 10 101 IPR016189 GO:0003743|GO:0006413
Vifa5g01817 435 SMART 542_3 344 431 IPR003307 GO:0005515
Vifa5g01817 435 SUPERFAMILY ARM repeat 286 429 IPR016024 -
Vifa5g01817 435 Gene3D - 280 435 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g01817 1 428 Eukaryotic Initiation Factors Gene Family AT1G36730 65.237 5.45e-178 503
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g01817 K03262 - gmx:100777906 637.106