Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g01812 ATGATGGTCAGGAACTTGAGGATTGGAGCAATGCTTAGAACTGTTTTGCCTGCATTGGCTCATGCTGTTGTTTTGAATTCTCGCCATACTGTGTGCCAAGAAGGAACGGCAGAAAATTTGAAAGCGGCGCTTCAGGTCCTTTCTGTGGCAGTTGTTGAAGCATATAACATACTGCCAAATTTGGATATCATAGTCCCATCTCTCATGAACAAAGGCATTGAGTTTTCAGTTTCAAGTTTATCAATGGTTCCAGGAATCCCAATTAAGCCTATGCTTGCAAAGATTACCAATGGCATTCCCCAAGCATTGAAGCTATTTCAAAATAAAGCCTTTACATGTGAATATAAGTATGATGGTCAGCGAGCTCAAATACACAGATTAGTCGATGGATCAGTTCGTGTTTTTTCGAGAAATGGAGATGAATCAACTTCGAGATTCCCTGATCTGATTGACACAATAAGGGAATCTTGCAAGCCTGTTGCATCAACTTTCATAATCGATGCAGAGGTTGTTGGTATTGATAGAAAAAATGGATATAGAATTATGTCATTCCAGGAGCTATCTTCACGTGAGAGAGGTGGCAAAGATACTCTAGTTACTAAAGAGAGCATAAAGGTGGACATCTGCGTCTTTGTCTTCGATATCATGTTTGCAAATGGAGAACAGTTACTGGATTTTCCACTCCGCCTAAGACGAAAGTATCTGAAGGATTTGTTCTATGATGAACGGCCTGGGTATTTTGCATATGCAAAAGAAACAACTATTGAAGCAGATGACGCTTGCTTAACATGTGAAGCCACATTAACTAGAATAAATGCTTTCCTTGAAGATGCAATCCACTCTTCATGTGAAGGAATTATGGTGAAAATGTTGGATATTGATGCTGGGTATTCTCCATCGAAGCGATCTGACAAATGGTTAAAGGTCAAGCGAGATTATGTAGAAGGATTAAGTGATACTCTCGATTTAGTACCAATTGGTGCTTGGCATGGAAATGGAAGGAAAGCTGGATGGTATAGTCCATTTCTCATGGCATGTTTCAATCCTGAAACTGAGGAGTATCAAAGTGTATGCCGAGTGATGTCTGGGTTCTCAGACTCTTTTTACATAGAGATGAGAGAAATCTTTTCTGGGGACAAAGTCTTGTCAAAAAAGCCACCATATTATCAAACAGGAGAGACACCAGACATGTGGTTTGTTCCGCAACTTGTTTGGGAAATAAGAGGTGCAGACTTCACAGTATCCCCAGTTCATCATGCTGCTATTGGTTTAGTTCATCCATCTCGAGGCATCTCAATCAGATTTCCAAGATTTATTTCCAGCTTGTCAGACAGAAATCCAGAAGAATGTAGCACAGCTGCTGATATAGTTGAAATGTTTCATTCACAGACTCGGAAGATGGATGTCACAACTAAAGGTTGA 1422 0.4015 MMVRNLRIGAMLRTVLPALAHAVVLNSRHTVCQEGTAENLKAALQVLSVAVVEAYNILPNLDIIVPSLMNKGIEFSVSSLSMVPGIPIKPMLAKITNGIPQALKLFQNKAFTCEYKYDGQRAQIHRLVDGSVRVFSRNGDESTSRFPDLIDTIRESCKPVASTFIIDAEVVGIDRKNGYRIMSFQELSSRERGGKDTLVTKESIKVDICVFVFDIMFANGEQLLDFPLRLRRKYLKDLFYDERPGYFAYAKETTIEADDACLTCEATLTRINAFLEDAIHSSCEGIMVKMLDIDAGYSPSKRSDKWLKVKRDYVEGLSDTLDLVPIGAWHGNGRKAGWYSPFLMACFNPETEEYQSVCRVMSGFSDSFYIEMREIFSGDKVLSKKPPYYQTGETPDMWFVPQLVWEIRGADFTVSPVHHAAIGLVHPSRGISIRFPRFISSLSDRNPEECSTAADIVEMFHSQTRKMDVTTKG 473
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g01812 473 Gene3D - 1 92 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Vifa5g01812 473 ProSiteProfiles ATP-dependent DNA ligase family profile. 201 348 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Vifa5g01812 473 ProSitePatterns ATP-dependent DNA ligase AMP-binding site. 114 122 IPR016059 GO:0003909
Vifa5g01812 473 CDD Adenylation_DNA_ligase_I_Euk 81 313 - -
Vifa5g01812 473 FunFam DNA ligase 119 250 - -
Vifa5g01812 473 CDD OBF_DNA_ligase_I 318 462 - -
Vifa5g01812 473 FunFam DNA ligase 315 472 - -
Vifa5g01812 473 Gene3D - 100 314 - -
Vifa5g01812 473 Gene3D - 315 472 IPR012340 -
Vifa5g01812 473 NCBIfam ATP-dependent DNA ligase 3 460 IPR000977 GO:0003910|GO:0005524|GO:0071897
Vifa5g01812 473 SUPERFAMILY DNA ligase/mRNA capping enzyme, catalytic domain 46 312 - -
Vifa5g01812 473 SUPERFAMILY Nucleic acid-binding proteins 319 463 IPR012340 -
Vifa5g01812 473 Gene3D DNA ligase/mRNA capping enzyme 119 250 - -
Vifa5g01812 473 PANTHER DNA LIGASE 1/3 FAMILY MEMBER 2 465 - -
Vifa5g01812 473 Pfam ATP dependent DNA ligase C terminal region 336 441 IPR012309 GO:0003910|GO:0006281|GO:0006310
Vifa5g01812 473 Pfam ATP dependent DNA ligase domain 90 310 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g01812 Vifa-Chr5 529006042 529027113 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g01812 1 463 Core DNA Replication Machinery Family AT1G08130 40.215 7.60e-127 385
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g01812 - - gmx:100807673 869.766