Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g01811 ATGACATGGCTAGTCAATTCCATGACTGAAGAGATAGGTGCAAACTATCTTTGTTATGCTACTGCAAAAGATCTTTGGGAAAGTGTCTCTCAGATGTATTCCGATTTGGACAACCAATCCCAAATTTATGAATTAACTCTCCAGCTTGGAGAAATTCGTCAAGCTGAAGATTCTGTTACCAAATACTTCAATTGTCTCAAGCGTATTTGGCAAGATTTGGATCTGTTCAATGTATATGAGTGGAAGTCACCCGAGGACTGCAAACACTACAAGAAGATGGTGGATGTTCGTCGTGTCTTCAAGTTTCTTGCAGGTCTAAATATTGAGTTTGATGAGGTTCGTGGCCGAATTCTTGGCAGGAACCCTATCCCTCCAATTGGTGAAGTATTTGCTGAAGTGCGTCGCGAAGAGAGTCGCAGGCAGGTGATGCTTGGAAAAAAGGCTGCCATTGTCCCTCCACCAGTCGAAGGATCTGCATTGGCTGTTCCTCAAGTCAATCGCAAACCTTTCCCTAATCCACGAGGTGGTGACAAGAATCATTTAGTTTGCGACTACTGTGGTCAAAATCGTCACACTCGGCAAAACTGTTTCAAACTACATGGTAGGCCAAATAATAGAAAGGCTGGAAGGTTTGGTGATCGCCCTACGTCTACAACCAATGAGGCTGACTCGTCTCCATTTACTAAGGAGCAAATGGATCACCTTTTTAAACTTCTAAAGTTCAATTCATCACCTAATGTTCCTGTTGCAACTGTGGTACAAACAGGGGGAGAAAAACTGACTGAGGATCATAATCCTCAAATTCAAGTGTATGTCCGAAAAAGGTTTCACAAAGGTATTACAAATCCAATTGTCGCTCCGGAAAAAATCCAATCTGATTTACCAAGTGAAGGTCCTACTGAAACTTCACCTTCTAGTTCTTCATCTGGTAATCCATCTTACTCTTCCAATGATTTACTAGATTTGTCTTTTCCTAATATTAATCTTCCTATTGCTTTGAGAAAAAAAATTCCTGACCTTAATATCCCAATTGCTGATAGGAAACGTACTCGAACATGCACTAAACACCCCATATTACCCTACCAAAGAGGGAAAAATGGCAGTGAGGGAATCCTATTTCTTAAGTTAACCATTTCATATTGGTGGGGTCCTTCACGGGAAAAGGCAAAAGTCAGGAACTTGAGGATTGGAGCAATGCTTAGAACTGTTTTGCCTGCATTGGCTCATGCTGTTGTTTTGAATTCTCGCCATACTGTGTGCCAAGAAGGAACGGCAGAAAATTTGAAAGCGGCGCTTCAGGTCCTTTCTGTGGCAGTTGTTGAAGCATATAACATACTGCCAAATTTGGATATCATAGTCCCATCTCTCATGAACAAAGGCATTGAGTTTTCAGTTTCAAGTTTATCAATGGTTCCAGGAATCCCAATTAAGCCTATGCTTGCAAAGATTACCAATGGCATTCCCCAAGCATTGAAGCTATTTCAAAATAAAGCCTTTACATGTGAATATAAGTATGATGGTCAGCGAGCTCAAATACACAGATTAGTCGATGGATCAGTTCGTGTTTTTTCGAGAAATGGAGATGAATCAACTTCGAGATTCCCTGATCTGATTGACACAATAAGGGAATCTTGCAAGCCTGTTGCATCAACTTTCATAATCGATGCAGAGGTTGTTGGTATTGATAGAAAAAATGGATATAGAATTATGTCATTCCAGGAGCTATCTTCACGTGAGAGAGGTGGCAAAGATACTCTAGTTACTAAAGAGAGCATAAAGGTGGACATCTGCGTCTTTGTCTTCGATATCATGTTTGCAAATGGAGAACAGTTACTGGATTTTCCACTCCGCCTAAGACGAAAGTATCTGAAGGATTTGTTCTATGATGAACGGCCTGGGTATTTTGCATATGCAAAAGAAACAACTATTGAAGCAGATGACGCTTGCTTAACATGTGAAGCCACATTAACTAGAATAAATGCTTTCCTTGAAGATGCAATCCACTCTTCATGTGAAGGAATTATGGTGAAAATGTTGGATATTGATGCTGGGTATTCTCCATCGAAGCGATCTGACAAATGGTTAAAGGTCAAGCGAGATTATGTAGAAGGATTAAGTGATACTCTCGATTTAGTACCAATTGGTGCTTGGCATGGAAATGGAAGGAAAGCTGGATGGTATAGTCCATTTCTCATGGCATGTTTCAATCCTGAAACTGAGGAGTATCAAAGTGTATGCCGAGTGATGTCTGGGTTCTCAGACTCTTTTTACATAGAGATGAGAGAAATCTTTTCTGGGGACAAAGTCTTGTCAAAAAAGCCACCATATTATCAAACAGGAGAGACACCAGACATGTGGTTTGTTCCGCAACTTGTTTGGGAAATAAGAGGTGCAGACTTCACAGTATCCCCAGTTCATCATGCTGCTATTGGTTTAGTTCATCCATCTCGAGGCATCTCAATCAGATTTCCAAGATTTATTTCCAGCTTGTCAGACAGAAATCCAGAAGAATGTAGCACAGCTGCTGATATAGTTGAAATGTTTCATTCACAGACTCGGAAGATGGATGTCACAACTAAAGGTTGA 2586 0.4064 MTWLVNSMTEEIGANYLCYATAKDLWESVSQMYSDLDNQSQIYELTLQLGEIRQAEDSVTKYFNCLKRIWQDLDLFNVYEWKSPEDCKHYKKMVDVRRVFKFLAGLNIEFDEVRGRILGRNPIPPIGEVFAEVRREESRRQVMLGKKAAIVPPPVEGSALAVPQVNRKPFPNPRGGDKNHLVCDYCGQNRHTRQNCFKLHGRPNNRKAGRFGDRPTSTTNEADSSPFTKEQMDHLFKLLKFNSSPNVPVATVVQTGGEKLTEDHNPQIQVYVRKRFHKGITNPIVAPEKIQSDLPSEGPTETSPSSSSSGNPSYSSNDLLDLSFPNINLPIALRKKIPDLNIPIADRKRTRTCTKHPILPYQRGKNGSEGILFLKLTISYWWGPSREKAKVRNLRIGAMLRTVLPALAHAVVLNSRHTVCQEGTAENLKAALQVLSVAVVEAYNILPNLDIIVPSLMNKGIEFSVSSLSMVPGIPIKPMLAKITNGIPQALKLFQNKAFTCEYKYDGQRAQIHRLVDGSVRVFSRNGDESTSRFPDLIDTIRESCKPVASTFIIDAEVVGIDRKNGYRIMSFQELSSRERGGKDTLVTKESIKVDICVFVFDIMFANGEQLLDFPLRLRRKYLKDLFYDERPGYFAYAKETTIEADDACLTCEATLTRINAFLEDAIHSSCEGIMVKMLDIDAGYSPSKRSDKWLKVKRDYVEGLSDTLDLVPIGAWHGNGRKAGWYSPFLMACFNPETEEYQSVCRVMSGFSDSFYIEMREIFSGDKVLSKKPPYYQTGETPDMWFVPQLVWEIRGADFTVSPVHHAAIGLVHPSRGISIRFPRFISSLSDRNPEECSTAADIVEMFHSQTRKMDVTTKG 861
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g01811 861 CDD OBF_DNA_ligase_I 706 850 - -
Vifa5g01811 861 Pfam ATP dependent DNA ligase domain 478 698 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Vifa5g01811 861 MobiDBLite consensus disorder prediction 283 315 - -
Vifa5g01811 861 MobiDBLite consensus disorder prediction 211 226 - -
Vifa5g01811 861 Gene3D - 703 860 IPR012340 -
Vifa5g01811 861 MobiDBLite consensus disorder prediction 295 315 - -
Vifa5g01811 861 FunFam DNA ligase 507 638 - -
Vifa5g01811 861 Gene3D - 388 480 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Vifa5g01811 861 PANTHER DNA LIGASE 1/3 FAMILY MEMBER 392 853 - -
Vifa5g01811 861 FunFam DNA ligase 703 860 - -
Vifa5g01811 861 NCBIfam ATP-dependent DNA ligase 393 848 IPR000977 GO:0003910|GO:0005524|GO:0071897
Vifa5g01811 861 SUPERFAMILY Nucleic acid-binding proteins 707 851 IPR012340 -
Vifa5g01811 861 Gene3D DNA ligase/mRNA capping enzyme 507 638 - -
Vifa5g01811 861 Gene3D - 489 702 - -
Vifa5g01811 861 MobiDBLite consensus disorder prediction 197 226 - -
Vifa5g01811 861 Pfam ATP dependent DNA ligase C terminal region 724 829 IPR012309 GO:0003910|GO:0006281|GO:0006310
Vifa5g01811 861 SUPERFAMILY DNA ligase/mRNA capping enzyme, catalytic domain 434 700 - -
Vifa5g01811 861 CDD Adenylation_DNA_ligase_I_Euk 469 701 - -
Vifa5g01811 861 ProSitePatterns ATP-dependent DNA ligase AMP-binding site. 502 510 IPR016059 GO:0003909
Vifa5g01811 861 ProSiteProfiles ATP-dependent DNA ligase family profile. 589 736 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g01811 Vifa-Chr5 529000083 529027113 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g01811 394 851 Core DNA Replication Machinery Family AT1G08130 40.652 3.03e-121 384
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g01811 - - gmx:100807673 868.996
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa5g01811 5 529000083 529027113 Vifa5g01811 5 529000083 529027113 ECH