Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g01809 ATGCCTAAATCCACTATCGACCCCAAATCCGACGATAATCGGTTAAATTTTAAGGTCAAGCTCGCTGCAACGGGAAGAAAGCGGTCCAAGAAAACAACGGATCCGCTTAAGCCGAGGAGGCCTCCGAGCGCTTTCTTCGTTTTCATGTCTGAGTTCAGAGTGAAGTACTCGCATTCTAACAAAATCAGTGGCGTATCTGTTGTTAGTAAAGCTGGTTCTGAGGAATGGAAAGCGATGTCGTATGCTGAGAAGGCTCCTTACTTTGCTAAGGTGGGAAAGATGAAAGAGGAGTATGAGAAGATTAAACGCGCCTATAATGATGCAGAAAAAAAGAAGGAAGAGGATTATGAGGAGATTATACGAGCCTACAATGTTAGATTGCCTGGTGACTATGGTACTGTTTTTACTCCTGTATCAACGACCAAGAAGATTAACCTAATGGCAGACACTTCCTCCCATGGTCGGTCCCTTAAGATGTTAGAAATGCGTTCCTTCCCCTCAACTTCCTCCGCTAACGAGTCTTCGTCGTCGGTTGAAATCCGAGGGGTTCAGTCAAAGCTTTCCGGTTCACATGCGACTCCGACTCAATCTTTTGACTCATGCCAGCCCATTGCCACGATTTTACCTGAAAACTATGCCAGTGGTGATGACAACTATGCCAGTGATGATGAAGACGACCAAACAGTTATTGATGAGAAAGTTCCATCAGATCTTGACACTGTGAGGGCAGGCCCACAACCAAAAAAATTTCAATATGCAGATGTAGTCATGAAGGAAGATACAGTCATTTTCGAAGAAACAACCACCTTGAAACGGGTTTTCCAGGAAGTCGACCCTTATCAAGATCCAATGGATGACCTACTTCACCAGGCTGAGAAAGATTGTAACAGCGACACTGTTGATACTGACCCGGCAAATGACTTGCTTTCTTTGCTGACGGACCCAAGTCAAGTAGTTTCTATGTCTGGTATGTCCTCCCCTGTTGCTGAGCATGATTCTAGGGCCTCCAAAGCAATGGAACTTTTCAAAGAACTGAAGGGATTGATGTCGAAGCCTTTGGATATTGCTTCTGCTGACATCTCTGCATGCAATCAGATGAGGATGATAGTTGAAGAACTCAATCCTCTCAAGCAACTACTACCTCTCTCAAGCCAAATTACTCTTGAGCAGATCAACAACTTTCTTACTCTTCTCGCCTCCAAGAATGCTCTCTTAAGATTTATCCTTCCTGTTTATGAGCAAGCGGTGAAGAGCAAAGACGACTTGGTGAAGAAGCTCCTTTCTCTCAAAGAAGAAAAAGACAAGATTGCAGCTGATAGAAAGCAGCAAGAGGCAGTTAAGGTCAAGGCTGAAGAGAAAGTTGAGATACTCAAGAAGCAATTAGCCTTGGCCGAGGCGGAACTAGCTGAAGCTCACGCTGGTATAGGTGACTCCATCGAGATGGAGAAGAAGCGTGTCCACAACATCAACGCCCTTCGCACTGAGGTGAATCAGACTGCAACAACTCTAAAGAATCTTCGGTCAGACTACGAGTCAGCAATGTCTACAAAGAAAGACCTTGAGGACTTGCTGTCACTAATTACCCAATCTAGTTCCCCCTGGTATACTTGA 1611 0.4482 MPKSTIDPKSDDNRLNFKVKLAATGRKRSKKTTDPLKPRRPPSAFFVFMSEFRVKYSHSNKISGVSVVSKAGSEEWKAMSYAEKAPYFAKVGKMKEEYEKIKRAYNDAEKKKEEDYEEIIRAYNVRLPGDYGTVFTPVSTTKKINLMADTSSHGRSLKMLEMRSFPSTSSANESSSSVEIRGVQSKLSGSHATPTQSFDSCQPIATILPENYASGDDNYASDDEDDQTVIDEKVPSDLDTVRAGPQPKKFQYADVVMKEDTVIFEETTTLKRVFQEVDPYQDPMDDLLHQAEKDCNSDTVDTDPANDLLSLLTDPSQVVSMSGMSSPVAEHDSRASKAMELFKELKGLMSKPLDIASADISACNQMRMIVEELNPLKQLLPLSSQITLEQINNFLTLLASKNALLRFILPVYEQAVKSKDDLVKKLLSLKEEKDKIAADRKQQEAVKVKAEEKVEILKKQLALAEAELAEAHAGIGDSIEMEKKRVHNINALRTEVNQTATTLKNLRSDYESAMSTKKDLEDLLSLITQSSSPWYT 536
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g01809 536 Coils Coil 489 523 - -
Vifa5g01809 536 Coils Coil 91 118 - -
Vifa5g01809 536 Gene3D High mobility group box domain 23 120 IPR036910 -
Vifa5g01809 536 Pfam HMG (high mobility group) box 38 106 IPR009071 -
Vifa5g01809 536 MobiDBLite consensus disorder prediction 164 204 - -
Vifa5g01809 536 SUPERFAMILY HMG-box 23 105 IPR036910 -
Vifa5g01809 536 MobiDBLite consensus disorder prediction 164 242 - -
Vifa5g01809 536 PANTHER HIGH MOBILITY GROUP B PROTEIN 4-RELATED 10 114 IPR031061 -
Vifa5g01809 536 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 38 106 IPR009071 -
Vifa5g01809 536 Coils Coil 412 474 - -
Vifa5g01809 536 SMART hmgende2 37 107 IPR009071 -
Vifa5g01809 536 CDD HMG-box_AtHMGB1-like 40 98 - -
Vifa5g01809 536 MobiDBLite consensus disorder prediction 19 42 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g01809 Vifa-Chr5 528404919 528408964 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Vifa5g01809 HMG_box 9.9e-14 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g01809 K25507 - psat:127126822 819.305