Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g01800 ATGGCGAATTCAATTCACAAAGTTAGTGGCATCGGGAGCAGCTCTATGGTTCGAAAACTTGAAACAGATGAAATTGATGCTGAAATGTATATTCAGCCTGGAAATCCCTATTTTTTTGCGAAATACTATCATTACAGACCCAATGAATTGCATATACCAAAAAAAGTTATTAAGGATTTCTGCCTCTGCTTCACAAAACATGTCAACCTTATATGTTGCAACTGCAAGGATATAGAGAGCAATGAAATAGCATCTTATCATGAGAAGTTGCCCGAAATGACCACAAAACATAGCAAAAAGAGAGGAGAAATACGTACATGGAAAAATGGCCGAGTGTTTGTGCTGGGGTGGGAAAATTTTTGGGCCAAGTACAAGATTAAAGAAAGTGATAGCTGCTTGTGTGAAATTGTGTTGCATCAAGAGAAAGCAATAGAAATGATAAGGGTGCACCTTGTTAGGAAGGTTAGGAATGAATGA 477 0.3774 MANSIHKVSGIGSSSMVRKLETDEIDAEMYIQPGNPYFFAKYYHYRPNELHIPKKVIKDFCLCFTKHVNLICCNCKDIESNEIASYHEKLPEMTTKHSKKRGEIRTWKNGRVFVLGWENFWAKYKIKESDSCLCEIVLHQEKAIEMIRVHLVRKVRNE 158
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g01800 158 Gene3D - 18 156 IPR015300 -
Vifa5g01800 158 SUPERFAMILY DNA-binding pseudobarrel domain 31 137 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g01800 Vifa-Chr5 526296966 526298263 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g01800 3 153 B3 DNA Binding Superfamily AT5G57720 28.205 1.83e-09 53.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g01800 - - mtr:120578114 225.713